Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26050 and LU632_RS26055 are separated by 44 nucleotides LU632_RS26055 and LU632_RS26060 are separated by 1 nucleotides LU632_RS26060 and LU632_RS26065 overlap by 20 nucleotides LU632_RS26065 and LU632_RS26070 are separated by 118 nucleotides
LU632_RS26050: LU632_RS26050 - DUF1073 domain-containing protein, at 17,772 to 19,157
_RS26050
LU632_RS26055: LU632_RS26055 - DUF2442 domain-containing protein, at 19,202 to 19,450
_RS26055
LU632_RS26060: LU632_RS26060 - CCDC90 family protein, at 19,452 to 19,715
_RS26060
LU632_RS26065: LU632_RS26065 - recombinase family protein, at 19,696 to 20,274
_RS26065
LU632_RS26070: LU632_RS26070 - phage terminase large subunit, at 20,393 to 21,637
_RS26070
Position (kb) 19
20 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 18.467 kb on + strand, within LU632_RS26050 at 18.468 kb on - strand, within LU632_RS26050 at 18.471 kb on - strand, within LU632_RS26050 at 18.471 kb on - strand, within LU632_RS26050 at 18.550 kb on + strand, within LU632_RS26050 at 18.551 kb on - strand, within LU632_RS26050 at 18.633 kb on - strand, within LU632_RS26050 at 18.637 kb on + strand, within LU632_RS26050 at 18.637 kb on + strand, within LU632_RS26050 at 18.637 kb on + strand, within LU632_RS26050 at 18.637 kb on + strand, within LU632_RS26050 at 18.638 kb on - strand, within LU632_RS26050 at 18.687 kb on + strand, within LU632_RS26050 at 18.688 kb on - strand, within LU632_RS26050 at 18.688 kb on - strand, within LU632_RS26050 at 18.817 kb on + strand, within LU632_RS26050 at 18.833 kb on + strand, within LU632_RS26050 at 18.834 kb on - strand, within LU632_RS26050 at 18.861 kb on - strand, within LU632_RS26050 at 18.896 kb on + strand, within LU632_RS26050 at 18.923 kb on + strand, within LU632_RS26050 at 18.923 kb on + strand, within LU632_RS26050 at 18.924 kb on - strand, within LU632_RS26050 at 18.924 kb on - strand, within LU632_RS26050 at 18.994 kb on + strand, within LU632_RS26050 at 18.995 kb on - strand, within LU632_RS26050 at 18.995 kb on - strand, within LU632_RS26050 at 19.042 kb on + strand at 19.042 kb on + strand at 19.043 kb on - strand at 19.043 kb on - strand at 19.102 kb on + strand at 19.102 kb on + strand at 19.103 kb on - strand at 19.103 kb on - strand at 19.133 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.139 kb on + strand at 19.140 kb on - strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.142 kb on + strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.143 kb on - strand at 19.170 kb on + strand at 19.170 kb on + strand at 19.171 kb on - strand at 19.174 kb on + strand at 19.175 kb on - strand at 19.197 kb on - strand at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.408 kb on + strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.409 kb on - strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.413 kb on + strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.414 kb on - strand, within LU632_RS26055 at 19.436 kb on - strand at 19.472 kb on + strand at 19.473 kb on - strand at 19.473 kb on - strand at 19.602 kb on - strand, within LU632_RS26060 at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.750 kb on + strand at 19.755 kb on + strand, within LU632_RS26065 at 19.755 kb on + strand, within LU632_RS26065 at 19.914 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.129 kb on + strand, within LU632_RS26065 at 20.215 kb on + strand, within LU632_RS26065 at 20.275 kb on + strand at 20.275 kb on + strand at 20.395 kb on - strand at 20.420 kb on - strand at 20.428 kb on + strand at 20.428 kb on + strand at 20.429 kb on - strand at 20.440 kb on + strand at 20.440 kb on + strand at 20.441 kb on - strand at 20.441 kb on - strand at 20.443 kb on + strand at 20.443 kb on + strand at 20.444 kb on - strand at 20.444 kb on - strand at 20.445 kb on + strand at 20.445 kb on + strand at 20.446 kb on - strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.460 kb on + strand at 20.461 kb on - strand at 20.544 kb on + strand, within LU632_RS26070 at 20.544 kb on + strand, within LU632_RS26070 at 20.567 kb on - strand, within LU632_RS26070 at 20.572 kb on + strand, within LU632_RS26070 at 20.572 kb on + strand, within LU632_RS26070 at 20.573 kb on - strand, within LU632_RS26070 at 20.573 kb on - strand, within LU632_RS26070 at 20.619 kb on - strand, within LU632_RS26070 at 20.662 kb on + strand, within LU632_RS26070 at 20.686 kb on - strand, within LU632_RS26070
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 18,467 + LU632_RS26050 0.50 -1.5 18,468 - LU632_RS26050 0.50 -3.3 18,471 - LU632_RS26050 0.50 -0.9 18,471 - LU632_RS26050 0.50 -3.9 18,550 + LU632_RS26050 0.56 +0.4 18,551 - LU632_RS26050 0.56 -1.5 18,633 - LU632_RS26050 0.62 -1.3 18,637 + LU632_RS26050 0.62 -0.8 18,637 + LU632_RS26050 0.62 -2.1 18,637 + LU632_RS26050 0.62 -2.5 18,637 + LU632_RS26050 0.62 -2.0 18,638 - LU632_RS26050 0.62 -3.1 18,687 + LU632_RS26050 0.66 -1.5 18,688 - LU632_RS26050 0.66 -1.6 18,688 - LU632_RS26050 0.66 -0.6 18,817 + LU632_RS26050 0.75 -0.3 18,833 + LU632_RS26050 0.77 -1.7 18,834 - LU632_RS26050 0.77 -0.6 18,861 - LU632_RS26050 0.79 -2.1 18,896 + LU632_RS26050 0.81 -2.2 18,923 + LU632_RS26050 0.83 -2.0 18,923 + LU632_RS26050 0.83 -2.9 18,924 - LU632_RS26050 0.83 -0.1 18,924 - LU632_RS26050 0.83 -1.6 18,994 + LU632_RS26050 0.88 -1.2 18,995 - LU632_RS26050 0.88 -1.3 18,995 - LU632_RS26050 0.88 -1.0 19,042 + +0.7 19,042 + -0.7 19,043 - -2.0 19,043 - -0.3 19,102 + -0.5 19,102 + +0.2 19,103 - +0.2 19,103 - -1.3 19,133 + -1.5 19,139 + -0.7 19,139 + -1.2 19,139 + -1.5 19,139 + -0.5 19,139 + -2.0 19,139 + -2.0 19,140 - -2.4 19,142 + +0.4 19,142 + -1.8 19,142 + +1.3 19,142 + -1.5 19,142 + -2.1 19,142 + -0.5 19,143 - -1.6 19,143 - -2.6 19,143 - -0.9 19,143 - -2.5 19,143 - +0.1 19,143 - +0.5 19,170 + +0.0 19,170 + +1.0 19,171 - +5.2 19,174 + -1.9 19,175 - -2.9 19,197 - -3.3 19,408 + LU632_RS26055 0.83 -0.1 19,408 + LU632_RS26055 0.83 +0.5 19,408 + LU632_RS26055 0.83 -0.5 19,408 + LU632_RS26055 0.83 -1.3 19,408 + LU632_RS26055 0.83 +1.1 19,408 + LU632_RS26055 0.83 -3.4 19,409 - LU632_RS26055 0.83 +0.1 19,409 - LU632_RS26055 0.83 -3.3 19,409 - LU632_RS26055 0.83 +2.6 19,409 - LU632_RS26055 0.83 -0.2 19,409 - LU632_RS26055 0.83 +0.4 19,409 - LU632_RS26055 0.83 -0.5 19,409 - LU632_RS26055 0.83 +2.6 19,409 - LU632_RS26055 0.83 -4.6 19,409 - LU632_RS26055 0.83 +0.4 19,409 - LU632_RS26055 0.83 -3.1 19,409 - LU632_RS26055 0.83 +0.9 19,409 - LU632_RS26055 0.83 -0.5 19,413 + LU632_RS26055 0.85 +0.2 19,413 + LU632_RS26055 0.85 +1.7 19,413 + LU632_RS26055 0.85 +0.8 19,413 + LU632_RS26055 0.85 -2.9 19,413 + LU632_RS26055 0.85 -2.0 19,414 - LU632_RS26055 0.85 -0.2 19,414 - LU632_RS26055 0.85 -2.0 19,414 - LU632_RS26055 0.85 -0.3 19,414 - LU632_RS26055 0.85 -0.8 19,414 - LU632_RS26055 0.85 -1.5 19,414 - LU632_RS26055 0.85 -0.2 19,414 - LU632_RS26055 0.85 +0.3 19,414 - LU632_RS26055 0.85 -2.5 19,436 - -1.3 19,472 + +1.4 19,473 - -0.6 19,473 - +1.1 19,602 - LU632_RS26060 0.57 +1.4 19,750 + +0.6 19,750 + -3.8 19,750 + -2.3 19,750 + -3.1 19,755 + LU632_RS26065 0.10 -2.0 19,755 + LU632_RS26065 0.10 -1.9 19,914 + LU632_RS26065 0.38 -2.7 20,129 + LU632_RS26065 0.75 +1.3 20,129 + LU632_RS26065 0.75 -2.2 20,215 + LU632_RS26065 0.90 -0.7 20,275 + -0.4 20,275 + -2.0 20,395 - +1.0 20,420 - -2.5 20,428 + -0.3 20,428 + -0.2 20,429 - -1.7 20,440 + -2.9 20,440 + -1.4 20,441 - -1.9 20,441 - -0.8 20,443 + +0.6 20,443 + -0.1 20,444 - -2.7 20,444 - +0.4 20,445 + -1.5 20,445 + +0.8 20,446 - +0.3 20,460 + -1.4 20,460 + +1.9 20,460 + +3.1 20,460 + +0.2 20,461 - -0.9 20,544 + LU632_RS26070 0.12 -1.4 20,544 + LU632_RS26070 0.12 +0.2 20,567 - LU632_RS26070 0.14 -0.7 20,572 + LU632_RS26070 0.14 -0.5 20,572 + LU632_RS26070 0.14 +0.1 20,573 - LU632_RS26070 0.14 +0.4 20,573 - LU632_RS26070 0.14 +1.5 20,619 - LU632_RS26070 0.18 -2.5 20,662 + LU632_RS26070 0.22 +1.3 20,686 - LU632_RS26070 0.24 -0.1
Or see this region's nucleotide sequence