Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS26010 and LU632_RS26015 overlap by 1 nucleotides LU632_RS26015 and LU632_RS26020 overlap by 4 nucleotides LU632_RS26020 and LU632_RS26025 are separated by 9 nucleotides LU632_RS26025 and LU632_RS26030 are separated by 47 nucleotides
LU632_RS26010: LU632_RS26010 - head-tail adaptor, at 12,405 to 12,776
_RS26010
LU632_RS26015: LU632_RS26015 - hypothetical protein, at 12,776 to 13,306
_RS26015
LU632_RS26020: LU632_RS26020 - DUF4054 domain-containing protein, at 13,303 to 13,686
_RS26020
LU632_RS26025: LU632_RS26025 - hypothetical protein, at 13,696 to 14,256
_RS26025
LU632_RS26030: LU632_RS26030 - DUF2184 domain-containing protein, at 14,304 to 15,260
_RS26030
Position (kb) 13
14
15 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 12.708 kb on + strand, within LU632_RS26010 at 12.708 kb on + strand, within LU632_RS26010 at 12.712 kb on - strand, within LU632_RS26010 at 12.795 kb on + strand at 12.795 kb on + strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.796 kb on - strand at 12.813 kb on + strand at 13.043 kb on + strand, within LU632_RS26015 at 13.043 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.162 kb on + strand, within LU632_RS26015 at 13.163 kb on - strand, within LU632_RS26015 at 13.163 kb on - strand, within LU632_RS26015 at 13.164 kb on + strand, within LU632_RS26015 at 13.165 kb on - strand, within LU632_RS26015 at 13.165 kb on - strand, within LU632_RS26015 at 13.165 kb on - strand, within LU632_RS26015 at 13.233 kb on - strand, within LU632_RS26015 at 13.511 kb on + strand, within LU632_RS26020 at 14.296 kb on - strand at 14.309 kb on + strand at 14.309 kb on + strand at 14.310 kb on - strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.320 kb on + strand at 14.321 kb on - strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.371 kb on + strand at 14.372 kb on - strand at 14.372 kb on - strand at 14.379 kb on + strand at 14.380 kb on - strand at 14.412 kb on - strand, within LU632_RS26030 at 14.456 kb on + strand, within LU632_RS26030 at 14.459 kb on + strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.460 kb on - strand, within LU632_RS26030 at 14.461 kb on + strand, within LU632_RS26030 at 14.502 kb on - strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.510 kb on + strand, within LU632_RS26030 at 14.561 kb on + strand, within LU632_RS26030 at 14.672 kb on - strand, within LU632_RS26030 at 14.820 kb on - strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.842 kb on + strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.843 kb on - strand, within LU632_RS26030 at 14.869 kb on + strand, within LU632_RS26030 at 14.870 kb on - strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.890 kb on + strand, within LU632_RS26030 at 14.891 kb on - strand, within LU632_RS26030 at 14.905 kb on - strand, within LU632_RS26030 at 14.944 kb on - strand, within LU632_RS26030 at 15.000 kb on - strand, within LU632_RS26030 at 15.035 kb on + strand, within LU632_RS26030 at 15.036 kb on - strand, within LU632_RS26030 at 15.096 kb on - strand, within LU632_RS26030 at 15.105 kb on + strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.106 kb on - strand, within LU632_RS26030 at 15.119 kb on + strand, within LU632_RS26030 at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.180 kb on + strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.181 kb on - strand at 15.202 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 12,708 + LU632_RS26010 0.81 -4.0 12,708 + LU632_RS26010 0.81 +0.0 12,712 - LU632_RS26010 0.83 -0.2 12,795 + -2.4 12,795 + -1.0 12,796 - -1.0 12,796 - -2.3 12,796 - +1.0 12,796 - -0.5 12,796 - -0.8 12,796 - +0.2 12,796 - -0.5 12,796 - -2.0 12,796 - -1.9 12,813 + +0.0 13,043 + LU632_RS26015 0.50 -5.0 13,043 + LU632_RS26015 0.50 -0.3 13,162 + LU632_RS26015 0.73 +0.1 13,162 + LU632_RS26015 0.73 -1.2 13,162 + LU632_RS26015 0.73 -1.4 13,162 + LU632_RS26015 0.73 -2.4 13,163 - LU632_RS26015 0.73 +0.6 13,163 - LU632_RS26015 0.73 +2.0 13,164 + LU632_RS26015 0.73 -0.3 13,165 - LU632_RS26015 0.73 -4.1 13,165 - LU632_RS26015 0.73 -0.4 13,165 - LU632_RS26015 0.73 -0.9 13,233 - LU632_RS26015 0.86 +1.0 13,511 + LU632_RS26020 0.54 -2.9 14,296 - +0.6 14,309 + -1.2 14,309 + -1.0 14,310 - +4.2 14,320 + -1.2 14,320 + -1.4 14,320 + -0.4 14,320 + -0.7 14,321 - -1.2 14,371 + -1.9 14,371 + -2.5 14,371 + +0.8 14,372 - +2.0 14,372 - -1.0 14,379 + -0.3 14,380 - -1.4 14,412 - LU632_RS26030 0.11 -0.4 14,456 + LU632_RS26030 0.16 +1.6 14,459 + LU632_RS26030 0.16 -1.9 14,460 - LU632_RS26030 0.16 -3.3 14,460 - LU632_RS26030 0.16 -0.1 14,461 + LU632_RS26030 0.16 -1.4 14,502 - LU632_RS26030 0.21 +1.1 14,510 + LU632_RS26030 0.22 +0.7 14,510 + LU632_RS26030 0.22 -2.3 14,561 + LU632_RS26030 0.27 +0.7 14,672 - LU632_RS26030 0.38 -3.5 14,820 - LU632_RS26030 0.54 -1.9 14,842 + LU632_RS26030 0.56 -2.0 14,842 + LU632_RS26030 0.56 -0.7 14,843 - LU632_RS26030 0.56 +0.3 14,843 - LU632_RS26030 0.56 -3.6 14,843 - LU632_RS26030 0.56 -2.0 14,843 - LU632_RS26030 0.56 +0.0 14,869 + LU632_RS26030 0.59 -1.0 14,870 - LU632_RS26030 0.59 -4.0 14,890 + LU632_RS26030 0.61 -1.7 14,890 + LU632_RS26030 0.61 -0.7 14,890 + LU632_RS26030 0.61 -1.4 14,891 - LU632_RS26030 0.61 -1.7 14,905 - LU632_RS26030 0.63 -2.4 14,944 - LU632_RS26030 0.67 -1.0 15,000 - LU632_RS26030 0.73 +0.5 15,035 + LU632_RS26030 0.76 -2.9 15,036 - LU632_RS26030 0.76 -3.7 15,096 - LU632_RS26030 0.83 -0.6 15,105 + LU632_RS26030 0.84 -2.2 15,106 - LU632_RS26030 0.84 -1.3 15,106 - LU632_RS26030 0.84 -2.3 15,119 + LU632_RS26030 0.85 -0.2 15,180 + -1.6 15,180 + -1.4 15,180 + -0.7 15,180 + -0.9 15,180 + -0.6 15,181 - -1.3 15,181 - -1.4 15,181 - -1.7 15,202 - -2.2
Or see this region's nucleotide sequence