Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS25955 and LU632_RS25960 overlap by 4 nucleotides LU632_RS25960 and LU632_RS25965 overlap by 4 nucleotides LU632_RS25965 and LU632_RS25970 overlap by 14 nucleotides
LU632_RS25955: LU632_RS25955 - baseplate J/gp47 family protein, at 3,217 to 4,398
_RS25955
LU632_RS25960: LU632_RS25960 - hypothetical protein, at 4,395 to 4,748
_RS25960
LU632_RS25965: LU632_RS25965 - translation initiation factor IF-2, at 4,745 to 5,497
_RS25965
LU632_RS25970: LU632_RS25970 - hypothetical protein, at 5,484 to 6,419
_RS25970
Position (kb) 4
5 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 3.398 kb on + strand, within LU632_RS25955 at 3.398 kb on + strand, within LU632_RS25955 at 3.399 kb on - strand, within LU632_RS25955 at 3.399 kb on - strand, within LU632_RS25955 at 3.399 kb on - strand, within LU632_RS25955 at 3.399 kb on - strand, within LU632_RS25955 at 3.399 kb on - strand, within LU632_RS25955 at 3.399 kb on - strand, within LU632_RS25955 at 3.400 kb on + strand, within LU632_RS25955 at 3.400 kb on + strand, within LU632_RS25955 at 3.400 kb on + strand, within LU632_RS25955 at 3.401 kb on - strand, within LU632_RS25955 at 3.401 kb on - strand, within LU632_RS25955 at 3.401 kb on - strand, within LU632_RS25955 at 3.401 kb on - strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.431 kb on + strand, within LU632_RS25955 at 3.432 kb on - strand, within LU632_RS25955 at 3.432 kb on - strand, within LU632_RS25955 at 3.432 kb on - strand, within LU632_RS25955 at 3.432 kb on - strand, within LU632_RS25955 at 3.477 kb on - strand, within LU632_RS25955 at 3.553 kb on + strand, within LU632_RS25955 at 3.553 kb on + strand, within LU632_RS25955 at 3.553 kb on + strand, within LU632_RS25955 at 3.553 kb on + strand, within LU632_RS25955 at 3.560 kb on + strand, within LU632_RS25955 at 3.560 kb on + strand, within LU632_RS25955 at 3.564 kb on + strand, within LU632_RS25955 at 3.564 kb on + strand, within LU632_RS25955 at 3.564 kb on + strand, within LU632_RS25955 at 3.564 kb on + strand, within LU632_RS25955 at 3.564 kb on + strand, within LU632_RS25955 at 3.564 kb on + strand, within LU632_RS25955 at 3.565 kb on - strand, within LU632_RS25955 at 3.565 kb on - strand, within LU632_RS25955 at 3.593 kb on + strand, within LU632_RS25955 at 3.594 kb on - strand, within LU632_RS25955 at 3.675 kb on + strand, within LU632_RS25955 at 3.676 kb on - strand, within LU632_RS25955 at 3.676 kb on - strand, within LU632_RS25955 at 3.676 kb on - strand, within LU632_RS25955 at 3.676 kb on - strand, within LU632_RS25955 at 3.682 kb on - strand, within LU632_RS25955 at 3.784 kb on + strand, within LU632_RS25955 at 3.785 kb on - strand, within LU632_RS25955 at 3.914 kb on - strand, within LU632_RS25955 at 3.914 kb on - strand, within LU632_RS25955 at 4.003 kb on + strand, within LU632_RS25955 at 4.030 kb on - strand, within LU632_RS25955 at 4.135 kb on + strand, within LU632_RS25955 at 4.142 kb on - strand, within LU632_RS25955 at 4.193 kb on + strand, within LU632_RS25955 at 4.193 kb on + strand, within LU632_RS25955 at 4.194 kb on - strand, within LU632_RS25955 at 4.240 kb on + strand, within LU632_RS25955 at 4.280 kb on + strand at 4.280 kb on + strand at 4.280 kb on + strand at 4.281 kb on - strand at 4.281 kb on - strand at 4.284 kb on + strand at 4.284 kb on + strand at 4.284 kb on + strand at 4.285 kb on - strand at 4.285 kb on - strand at 4.296 kb on - strand at 4.334 kb on + strand at 4.335 kb on - strand at 4.340 kb on + strand at 4.340 kb on + strand at 4.340 kb on + strand at 4.340 kb on + strand at 4.340 kb on + strand at 4.340 kb on + strand at 4.341 kb on - strand at 4.398 kb on + strand at 4.399 kb on - strand at 4.426 kb on + strand at 4.426 kb on + strand at 4.427 kb on - strand at 4.440 kb on + strand, within LU632_RS25960 at 4.490 kb on - strand, within LU632_RS25960 at 4.497 kb on + strand, within LU632_RS25960 at 4.497 kb on + strand, within LU632_RS25960 at 4.497 kb on + strand, within LU632_RS25960 at 4.498 kb on - strand, within LU632_RS25960 at 4.549 kb on + strand, within LU632_RS25960 at 4.549 kb on + strand, within LU632_RS25960 at 4.549 kb on + strand, within LU632_RS25960 at 4.550 kb on - strand, within LU632_RS25960 at 4.550 kb on - strand, within LU632_RS25960 at 4.550 kb on - strand, within LU632_RS25960 at 4.564 kb on + strand, within LU632_RS25960 at 4.565 kb on - strand, within LU632_RS25960 at 4.565 kb on - strand, within LU632_RS25960 at 4.565 kb on - strand, within LU632_RS25960 at 4.565 kb on - strand, within LU632_RS25960 at 4.568 kb on + strand, within LU632_RS25960 at 4.568 kb on + strand, within LU632_RS25960 at 4.569 kb on - strand, within LU632_RS25960 at 4.629 kb on - strand, within LU632_RS25960 at 4.629 kb on - strand, within LU632_RS25960 at 4.685 kb on - strand, within LU632_RS25960 at 4.714 kb on + strand at 4.714 kb on + strand at 4.714 kb on + strand at 4.715 kb on - strand at 4.731 kb on + strand at 4.845 kb on - strand, within LU632_RS25965 at 4.909 kb on + strand, within LU632_RS25965 at 4.910 kb on - strand, within LU632_RS25965 at 4.995 kb on - strand, within LU632_RS25965 at 4.995 kb on - strand, within LU632_RS25965 at 5.055 kb on - strand, within LU632_RS25965 at 5.055 kb on - strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.143 kb on + strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.144 kb on - strand, within LU632_RS25965 at 5.165 kb on + strand, within LU632_RS25965 at 5.165 kb on + strand, within LU632_RS25965 at 5.165 kb on + strand, within LU632_RS25965 at 5.166 kb on - strand, within LU632_RS25965 at 5.166 kb on - strand, within LU632_RS25965 at 5.166 kb on - strand, within LU632_RS25965 at 5.166 kb on - strand, within LU632_RS25965 at 5.166 kb on - strand, within LU632_RS25965 at 5.194 kb on + strand, within LU632_RS25965 at 5.194 kb on + strand, within LU632_RS25965 at 5.194 kb on + strand, within LU632_RS25965 at 5.194 kb on + strand, within LU632_RS25965 at 5.195 kb on - strand, within LU632_RS25965 at 5.195 kb on - strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.285 kb on + strand, within LU632_RS25965 at 5.286 kb on - strand, within LU632_RS25965 at 5.286 kb on - strand, within LU632_RS25965 at 5.286 kb on - strand, within LU632_RS25965 at 5.456 kb on + strand at 5.456 kb on + strand at 5.457 kb on - strand at 5.457 kb on - strand at 5.457 kb on - strand at 5.457 kb on - strand at 5.457 kb on - strand at 5.478 kb on + strand at 5.479 kb on - strand at 5.479 kb on - strand at 5.548 kb on - strand at 5.548 kb on - strand at 5.591 kb on + strand, within LU632_RS25970 at 5.592 kb on - strand, within LU632_RS25970 at 5.592 kb on - strand, within LU632_RS25970 at 5.592 kb on - strand, within LU632_RS25970 at 5.615 kb on + strand, within LU632_RS25970 at 5.616 kb on - strand, within LU632_RS25970 at 5.668 kb on + strand, within LU632_RS25970 at 5.668 kb on + strand, within LU632_RS25970 at 5.669 kb on - strand, within LU632_RS25970 at 5.669 kb on - strand, within LU632_RS25970
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 3,398 + LU632_RS25955 0.15 +0.1 3,398 + LU632_RS25955 0.15 +0.2 3,399 - LU632_RS25955 0.15 -2.9 3,399 - LU632_RS25955 0.15 +0.5 3,399 - LU632_RS25955 0.15 -2.3 3,399 - LU632_RS25955 0.15 +1.7 3,399 - LU632_RS25955 0.15 -0.9 3,399 - LU632_RS25955 0.15 -0.2 3,400 + LU632_RS25955 0.15 -0.1 3,400 + LU632_RS25955 0.15 -0.4 3,400 + LU632_RS25955 0.15 +0.4 3,401 - LU632_RS25955 0.16 -0.4 3,401 - LU632_RS25955 0.16 -0.6 3,401 - LU632_RS25955 0.16 -0.5 3,401 - LU632_RS25955 0.16 -0.4 3,431 + LU632_RS25955 0.18 -2.8 3,431 + LU632_RS25955 0.18 +1.0 3,431 + LU632_RS25955 0.18 +0.7 3,431 + LU632_RS25955 0.18 -1.7 3,431 + LU632_RS25955 0.18 -2.9 3,431 + LU632_RS25955 0.18 -3.3 3,431 + LU632_RS25955 0.18 -0.5 3,431 + LU632_RS25955 0.18 +0.3 3,431 + LU632_RS25955 0.18 -1.2 3,431 + LU632_RS25955 0.18 -1.0 3,431 + LU632_RS25955 0.18 -3.0 3,432 - LU632_RS25955 0.18 -2.3 3,432 - LU632_RS25955 0.18 +1.0 3,432 - LU632_RS25955 0.18 +1.1 3,432 - LU632_RS25955 0.18 -0.2 3,477 - LU632_RS25955 0.22 +0.9 3,553 + LU632_RS25955 0.28 -0.6 3,553 + LU632_RS25955 0.28 +0.0 3,553 + LU632_RS25955 0.28 +1.0 3,553 + LU632_RS25955 0.28 +0.1 3,560 + LU632_RS25955 0.29 +1.4 3,560 + LU632_RS25955 0.29 -0.3 3,564 + LU632_RS25955 0.29 -0.8 3,564 + LU632_RS25955 0.29 -0.8 3,564 + LU632_RS25955 0.29 -2.0 3,564 + LU632_RS25955 0.29 +2.3 3,564 + LU632_RS25955 0.29 +0.9 3,564 + LU632_RS25955 0.29 +0.1 3,565 - LU632_RS25955 0.29 +1.0 3,565 - LU632_RS25955 0.29 -2.2 3,593 + LU632_RS25955 0.32 -1.9 3,594 - LU632_RS25955 0.32 -2.1 3,675 + LU632_RS25955 0.39 -1.6 3,676 - LU632_RS25955 0.39 +0.1 3,676 - LU632_RS25955 0.39 -0.1 3,676 - LU632_RS25955 0.39 +0.2 3,676 - LU632_RS25955 0.39 +2.3 3,682 - LU632_RS25955 0.39 -4.1 3,784 + LU632_RS25955 0.48 +0.1 3,785 - LU632_RS25955 0.48 -2.0 3,914 - LU632_RS25955 0.59 +0.4 3,914 - LU632_RS25955 0.59 +1.8 4,003 + LU632_RS25955 0.66 +1.6 4,030 - LU632_RS25955 0.69 -0.9 4,135 + LU632_RS25955 0.78 +1.1 4,142 - LU632_RS25955 0.78 +0.2 4,193 + LU632_RS25955 0.83 +1.0 4,193 + LU632_RS25955 0.83 +0.8 4,194 - LU632_RS25955 0.83 +0.8 4,240 + LU632_RS25955 0.87 -2.0 4,280 + -0.4 4,280 + +0.5 4,280 + -0.7 4,281 - -2.4 4,281 - -1.9 4,284 + -1.0 4,284 + -0.1 4,284 + -1.4 4,285 - -0.4 4,285 - -1.9 4,296 - +0.3 4,334 + -2.9 4,335 - +1.1 4,340 + -0.9 4,340 + -1.4 4,340 + +4.2 4,340 + +0.3 4,340 + -0.7 4,340 + +0.8 4,341 - -1.2 4,398 + -1.2 4,399 - -0.9 4,426 + +1.4 4,426 + +0.7 4,427 - +0.4 4,440 + LU632_RS25960 0.13 +0.9 4,490 - LU632_RS25960 0.27 -0.3 4,497 + LU632_RS25960 0.29 +1.1 4,497 + LU632_RS25960 0.29 +1.5 4,497 + LU632_RS25960 0.29 +0.7 4,498 - LU632_RS25960 0.29 -1.7 4,549 + LU632_RS25960 0.44 +0.1 4,549 + LU632_RS25960 0.44 -1.9 4,549 + LU632_RS25960 0.44 -0.6 4,550 - LU632_RS25960 0.44 +0.9 4,550 - LU632_RS25960 0.44 -3.3 4,550 - LU632_RS25960 0.44 -0.8 4,564 + LU632_RS25960 0.48 +2.2 4,565 - LU632_RS25960 0.48 +2.4 4,565 - LU632_RS25960 0.48 -3.1 4,565 - LU632_RS25960 0.48 -2.9 4,565 - LU632_RS25960 0.48 -3.0 4,568 + LU632_RS25960 0.49 -0.1 4,568 + LU632_RS25960 0.49 +1.6 4,569 - LU632_RS25960 0.49 +1.8 4,629 - LU632_RS25960 0.66 +3.1 4,629 - LU632_RS25960 0.66 +0.5 4,685 - LU632_RS25960 0.82 +1.4 4,714 + -0.9 4,714 + -1.4 4,714 + -2.4 4,715 - +0.5 4,731 + +0.8 4,845 - LU632_RS25965 0.13 +0.2 4,909 + LU632_RS25965 0.22 +1.7 4,910 - LU632_RS25965 0.22 -0.4 4,995 - LU632_RS25965 0.33 +0.7 4,995 - LU632_RS25965 0.33 +0.1 5,055 - LU632_RS25965 0.41 -0.2 5,055 - LU632_RS25965 0.41 +1.7 5,143 + LU632_RS25965 0.53 +0.0 5,143 + LU632_RS25965 0.53 -3.1 5,143 + LU632_RS25965 0.53 +1.9 5,143 + LU632_RS25965 0.53 +1.1 5,143 + LU632_RS25965 0.53 -1.2 5,143 + LU632_RS25965 0.53 -1.0 5,143 + LU632_RS25965 0.53 -2.7 5,143 + LU632_RS25965 0.53 -0.8 5,143 + LU632_RS25965 0.53 +1.2 5,143 + LU632_RS25965 0.53 +0.8 5,144 - LU632_RS25965 0.53 +0.1 5,144 - LU632_RS25965 0.53 +1.3 5,144 - LU632_RS25965 0.53 -0.4 5,144 - LU632_RS25965 0.53 +0.9 5,144 - LU632_RS25965 0.53 -2.0 5,144 - LU632_RS25965 0.53 -2.0 5,144 - LU632_RS25965 0.53 +1.6 5,144 - LU632_RS25965 0.53 +0.6 5,144 - LU632_RS25965 0.53 +1.1 5,144 - LU632_RS25965 0.53 -2.2 5,144 - LU632_RS25965 0.53 +1.1 5,144 - LU632_RS25965 0.53 +1.4 5,144 - LU632_RS25965 0.53 +1.3 5,165 + LU632_RS25965 0.56 +0.8 5,165 + LU632_RS25965 0.56 +1.5 5,165 + LU632_RS25965 0.56 +0.1 5,166 - LU632_RS25965 0.56 +0.4 5,166 - LU632_RS25965 0.56 +0.7 5,166 - LU632_RS25965 0.56 +0.2 5,166 - LU632_RS25965 0.56 +1.5 5,166 - LU632_RS25965 0.56 -1.7 5,194 + LU632_RS25965 0.60 +1.0 5,194 + LU632_RS25965 0.60 -0.2 5,194 + LU632_RS25965 0.60 +0.8 5,194 + LU632_RS25965 0.60 +1.1 5,195 - LU632_RS25965 0.60 +1.2 5,195 - LU632_RS25965 0.60 -3.8 5,285 + LU632_RS25965 0.72 -1.0 5,285 + LU632_RS25965 0.72 -1.3 5,285 + LU632_RS25965 0.72 -0.3 5,285 + LU632_RS25965 0.72 +1.2 5,285 + LU632_RS25965 0.72 +3.9 5,285 + LU632_RS25965 0.72 -0.1 5,285 + LU632_RS25965 0.72 +0.4 5,285 + LU632_RS25965 0.72 -0.9 5,285 + LU632_RS25965 0.72 -2.0 5,285 + LU632_RS25965 0.72 -0.9 5,286 - LU632_RS25965 0.72 -1.1 5,286 - LU632_RS25965 0.72 +0.4 5,286 - LU632_RS25965 0.72 +0.0 5,456 + -2.2 5,456 + +1.7 5,457 - -0.2 5,457 - +2.3 5,457 - -1.5 5,457 - +2.5 5,457 - -0.3 5,478 + -0.6 5,479 - -0.2 5,479 - -2.3 5,548 - -3.0 5,548 - -0.9 5,591 + LU632_RS25970 0.11 -2.2 5,592 - LU632_RS25970 0.12 -1.4 5,592 - LU632_RS25970 0.12 -3.6 5,592 - LU632_RS25970 0.12 +0.9 5,615 + LU632_RS25970 0.14 +1.2 5,616 - LU632_RS25970 0.14 -1.8 5,668 + LU632_RS25970 0.20 +1.6 5,668 + LU632_RS25970 0.20 -2.0 5,669 - LU632_RS25970 0.20 +0.6 5,669 - LU632_RS25970 0.20 +0.4
Or see this region's nucleotide sequence