Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25435

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS25430 and LU632_RS25435 overlap by 32 nucleotidesLU632_RS25435 and LU632_RS25440 are separated by 323 nucleotidesLU632_RS25440 and LU632_RS25445 are separated by 14 nucleotides LU632_RS25430: LU632_RS25430 - conjugal transfer protein TrbC, at 20,585 to 22,915 _RS25430 LU632_RS25435: LU632_RS25435 - phospholipase D family protein, at 22,884 to 23,357 _RS25435 LU632_RS25440: LU632_RS25440 - hypothetical protein, at 23,681 to 24,205 _RS25440 LU632_RS25445: LU632_RS25445 - relaxase/mobilization nuclease domain-containing protein, at 24,220 to 26,151 _RS25445 Position (kb) 22 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 21.932 kb on + strand, within LU632_RS25430at 21.932 kb on + strand, within LU632_RS25430at 21.932 kb on + strand, within LU632_RS25430at 21.932 kb on + strand, within LU632_RS25430at 21.933 kb on - strand, within LU632_RS25430at 21.933 kb on - strand, within LU632_RS25430at 21.933 kb on - strand, within LU632_RS25430at 21.983 kb on + strand, within LU632_RS25430at 21.983 kb on + strand, within LU632_RS25430at 21.984 kb on - strand, within LU632_RS25430at 22.102 kb on + strand, within LU632_RS25430at 22.142 kb on + strand, within LU632_RS25430at 22.142 kb on + strand, within LU632_RS25430at 22.184 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.310 kb on + strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.311 kb on - strand, within LU632_RS25430at 22.361 kb on + strand, within LU632_RS25430at 22.361 kb on + strand, within LU632_RS25430at 22.362 kb on - strand, within LU632_RS25430at 22.362 kb on - strand, within LU632_RS25430at 22.407 kb on + strand, within LU632_RS25430at 22.493 kb on + strand, within LU632_RS25430at 22.494 kb on - strand, within LU632_RS25430at 22.544 kb on - strand, within LU632_RS25430at 22.587 kb on - strand, within LU632_RS25430at 22.587 kb on - strand, within LU632_RS25430at 22.686 kb on + strandat 22.686 kb on + strandat 22.686 kb on + strandat 22.687 kb on - strandat 22.687 kb on - strandat 22.687 kb on - strandat 22.817 kb on + strandat 22.817 kb on + strandat 22.817 kb on + strandat 22.819 kb on + strandat 22.820 kb on - strandat 22.820 kb on - strandat 22.820 kb on - strandat 22.820 kb on - strandat 22.820 kb on - strandat 22.820 kb on - strandat 22.835 kb on + strandat 22.835 kb on + strandat 22.835 kb on + strandat 22.836 kb on - strandat 22.836 kb on - strandat 22.836 kb on - strandat 22.836 kb on - strandat 22.873 kb on + strandat 22.918 kb on + strandat 22.979 kb on + strand, within LU632_RS25435at 22.979 kb on + strand, within LU632_RS25435at 22.979 kb on + strand, within LU632_RS25435at 22.979 kb on + strand, within LU632_RS25435at 22.980 kb on - strand, within LU632_RS25435at 22.980 kb on - strand, within LU632_RS25435at 22.980 kb on - strand, within LU632_RS25435at 23.013 kb on + strand, within LU632_RS25435at 23.015 kb on + strand, within LU632_RS25435at 23.015 kb on + strand, within LU632_RS25435at 23.015 kb on + strand, within LU632_RS25435at 23.015 kb on + strand, within LU632_RS25435at 23.015 kb on + strand, within LU632_RS25435at 23.016 kb on - strand, within LU632_RS25435at 23.016 kb on - strand, within LU632_RS25435at 23.016 kb on - strand, within LU632_RS25435at 23.016 kb on - strand, within LU632_RS25435at 23.125 kb on + strand, within LU632_RS25435at 23.142 kb on - strand, within LU632_RS25435at 23.238 kb on + strand, within LU632_RS25435at 23.238 kb on + strand, within LU632_RS25435at 23.238 kb on + strand, within LU632_RS25435at 23.238 kb on + strand, within LU632_RS25435at 23.238 kb on + strand, within LU632_RS25435at 23.314 kb on - strandat 23.328 kb on - strandat 23.335 kb on + strandat 23.336 kb on - strandat 23.355 kb on + strandat 23.407 kb on + strandat 23.412 kb on + strandat 23.412 kb on + strandat 23.413 kb on - strandat 23.442 kb on + strandat 23.443 kb on - strandat 23.599 kb on + strandat 23.692 kb on + strandat 23.692 kb on + strandat 23.692 kb on + strandat 23.692 kb on + strandat 23.693 kb on - strandat 23.693 kb on - strandat 23.698 kb on + strandat 23.698 kb on + strandat 23.698 kb on + strandat 23.698 kb on + strandat 23.698 kb on + strandat 23.698 kb on + strandat 23.698 kb on + strandat 23.698 kb on + strandat 23.699 kb on - strandat 23.699 kb on - strandat 23.699 kb on - strandat 23.699 kb on - strandat 23.699 kb on - strandat 23.709 kb on - strandat 23.833 kb on + strand, within LU632_RS25440at 23.863 kb on + strand, within LU632_RS25440at 23.902 kb on - strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.031 kb on + strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.032 kb on - strand, within LU632_RS25440at 24.040 kb on - strand, within LU632_RS25440at 24.110 kb on - strand, within LU632_RS25440at 24.160 kb on + strandat 24.161 kb on - strandat 24.198 kb on - strandat 24.208 kb on - strandat 24.261 kb on + strandat 24.262 kb on - strandat 24.262 kb on - strandat 24.264 kb on + strandat 24.264 kb on + strandat 24.264 kb on + strandat 24.265 kb on - strandat 24.265 kb on - strandat 24.311 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
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21,932 + LU632_RS25430 0.58 -0.5
21,932 + LU632_RS25430 0.58 -0.6
21,932 + LU632_RS25430 0.58 -1.9
21,932 + LU632_RS25430 0.58 +1.7
21,933 - LU632_RS25430 0.58 +1.3
21,933 - LU632_RS25430 0.58 -0.5
21,933 - LU632_RS25430 0.58 -1.6
21,983 + LU632_RS25430 0.60 +2.1
21,983 + LU632_RS25430 0.60 +1.3
21,984 - LU632_RS25430 0.60 -1.7
22,102 + LU632_RS25430 0.65 +1.3
22,142 + LU632_RS25430 0.67 -0.4
22,142 + LU632_RS25430 0.67 -1.8
22,184 + LU632_RS25430 0.69 +1.0
22,310 + LU632_RS25430 0.74 -1.0
22,310 + LU632_RS25430 0.74 -2.7
22,310 + LU632_RS25430 0.74 +0.5
22,310 + LU632_RS25430 0.74 +1.1
22,310 + LU632_RS25430 0.74 -0.2
22,310 + LU632_RS25430 0.74 -1.0
22,310 + LU632_RS25430 0.74 +0.4
22,310 + LU632_RS25430 0.74 -0.7
22,310 + LU632_RS25430 0.74 +1.3
22,310 + LU632_RS25430 0.74 -0.3
22,311 - LU632_RS25430 0.74 -0.8
22,311 - LU632_RS25430 0.74 -1.7
22,311 - LU632_RS25430 0.74 -2.0
22,311 - LU632_RS25430 0.74 -0.3
22,311 - LU632_RS25430 0.74 +1.0
22,311 - LU632_RS25430 0.74 +0.1
22,311 - LU632_RS25430 0.74 -1.5
22,311 - LU632_RS25430 0.74 -1.2
22,311 - LU632_RS25430 0.74 -0.4
22,311 - LU632_RS25430 0.74 +1.3
22,311 - LU632_RS25430 0.74 +0.1
22,311 - LU632_RS25430 0.74 +0.6
22,361 + LU632_RS25430 0.76 +2.0
22,361 + LU632_RS25430 0.76 +0.0
22,362 - LU632_RS25430 0.76 -2.1
22,362 - LU632_RS25430 0.76 -1.4
22,407 + LU632_RS25430 0.78 -0.6
22,493 + LU632_RS25430 0.82 -1.2
22,494 - LU632_RS25430 0.82 +1.3
22,544 - LU632_RS25430 0.84 +1.0
22,587 - LU632_RS25430 0.86 +1.2
22,587 - LU632_RS25430 0.86 -0.8
22,686 + +1.5
22,686 + -0.6
22,686 + +0.4
22,687 - -0.6
22,687 - -0.3
22,687 - +2.3
22,817 + -0.7
22,817 + +2.1
22,817 + +1.6
22,819 + -0.1
22,820 - +2.3
22,820 - +1.1
22,820 - -0.3
22,820 - +1.1
22,820 - +0.1
22,820 - +1.9
22,835 + +0.3
22,835 + -2.4
22,835 + +0.2
22,836 - +1.7
22,836 - -3.1
22,836 - +1.5
22,836 - -1.5
22,873 + -1.4
22,918 + -0.3
22,979 + LU632_RS25435 0.20 +0.0
22,979 + LU632_RS25435 0.20 -2.8
22,979 + LU632_RS25435 0.20 +1.4
22,979 + LU632_RS25435 0.20 +0.3
22,980 - LU632_RS25435 0.20 -2.3
22,980 - LU632_RS25435 0.20 -2.9
22,980 - LU632_RS25435 0.20 +2.9
23,013 + LU632_RS25435 0.27 +1.3
23,015 + LU632_RS25435 0.28 -0.8
23,015 + LU632_RS25435 0.28 +0.7
23,015 + LU632_RS25435 0.28 +1.7
23,015 + LU632_RS25435 0.28 -1.7
23,015 + LU632_RS25435 0.28 -0.1
23,016 - LU632_RS25435 0.28 -0.8
23,016 - LU632_RS25435 0.28 -0.6
23,016 - LU632_RS25435 0.28 +0.6
23,016 - LU632_RS25435 0.28 -0.3
23,125 + LU632_RS25435 0.51 -0.2
23,142 - LU632_RS25435 0.54 -0.3
23,238 + LU632_RS25435 0.75 -2.0
23,238 + LU632_RS25435 0.75 -2.3
23,238 + LU632_RS25435 0.75 +1.5
23,238 + LU632_RS25435 0.75 +0.6
23,238 + LU632_RS25435 0.75 +0.3
23,314 - -1.8
23,328 - +0.8
23,335 + -1.9
23,336 - -1.0
23,355 + -0.0
23,407 + +3.8
23,412 + +1.3
23,412 + -1.7
23,413 - -1.8
23,442 + -0.3
23,443 - -1.8
23,599 + -0.8
23,692 + -1.6
23,692 + -1.4
23,692 + -1.2
23,692 + -0.7
23,693 - +0.7
23,693 - +0.3
23,698 + +1.3
23,698 + -0.2
23,698 + -0.3
23,698 + -3.1
23,698 + -0.3
23,698 + +0.5
23,698 + +1.3
23,698 + +0.9
23,699 - -0.0
23,699 - -0.6
23,699 - -0.6
23,699 - -0.9
23,699 - +1.2
23,709 - -2.8
23,833 + LU632_RS25440 0.29 +0.9
23,863 + LU632_RS25440 0.35 +0.0
23,902 - LU632_RS25440 0.42 +2.3
24,031 + LU632_RS25440 0.67 +0.3
24,031 + LU632_RS25440 0.67 -1.7
24,031 + LU632_RS25440 0.67 +0.2
24,031 + LU632_RS25440 0.67 -0.0
24,031 + LU632_RS25440 0.67 +0.6
24,031 + LU632_RS25440 0.67 +0.2
24,031 + LU632_RS25440 0.67 +1.0
24,031 + LU632_RS25440 0.67 +1.6
24,031 + LU632_RS25440 0.67 -1.7
24,031 + LU632_RS25440 0.67 -0.7
24,031 + LU632_RS25440 0.67 +1.3
24,031 + LU632_RS25440 0.67 -0.5
24,031 + LU632_RS25440 0.67 -0.2
24,031 + LU632_RS25440 0.67 -0.0
24,032 - LU632_RS25440 0.67 -0.8
24,032 - LU632_RS25440 0.67 -3.5
24,032 - LU632_RS25440 0.67 +0.4
24,032 - LU632_RS25440 0.67 +0.3
24,032 - LU632_RS25440 0.67 +0.5
24,032 - LU632_RS25440 0.67 -0.7
24,032 - LU632_RS25440 0.67 -2.4
24,032 - LU632_RS25440 0.67 -1.9
24,032 - LU632_RS25440 0.67 -1.3
24,032 - LU632_RS25440 0.67 +0.5
24,032 - LU632_RS25440 0.67 -1.0
24,032 - LU632_RS25440 0.67 -1.0
24,032 - LU632_RS25440 0.67 +0.3
24,032 - LU632_RS25440 0.67 +0.3
24,040 - LU632_RS25440 0.68 +0.1
24,110 - LU632_RS25440 0.82 -0.1
24,160 + -0.5
24,161 - -0.9
24,198 - -0.1
24,208 - +1.7
24,261 + -0.3
24,262 - +2.3
24,262 - -0.7
24,264 + +1.0
24,264 + +1.0
24,264 + -2.4
24,265 - -0.7
24,265 - +0.6
24,311 + +0.1

Or see this region's nucleotide sequence