Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24635

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
4,692,851	+				-0.3
4,692,867	+				-0.3
4,692,868	-				-0.7
4,692,869	+				-0.6
4,692,870	-				+1.0
4,692,870	-				+1.5
4,693,214	+		LU632_RS24630	0.41	-0.1
4,693,215	-		LU632_RS24630	0.41	-1.3
4,693,220	-		LU632_RS24630	0.42	+1.7
4,693,237	-		LU632_RS24630	0.44	-1.8
4,693,301	-		LU632_RS24630	0.53	-0.4
4,693,301	-		LU632_RS24630	0.53	-0.2
4,693,445	+		LU632_RS24630	0.72	-1.0
4,693,445	+		LU632_RS24630	0.72	-0.1
4,693,564	-		LU632_RS24630	0.88	-0.9
4,693,702	-				+0.3
4,693,736	+				+1.3
4,693,737	-				+0.8
4,693,740	-				-0.6
4,693,821	+				-0.4
4,693,875	-		LU632_RS24635	0.15	-1.4
4,693,891	+		LU632_RS24635	0.19	-0.3
4,693,946	-		LU632_RS24635	0.32	+0.1
4,693,946	-		LU632_RS24635	0.32	+1.5
4,693,948	-		LU632_RS24635	0.32	-1.9
4,693,961	+		LU632_RS24635	0.35	-0.0
4,693,961	+		LU632_RS24635	0.35	+0.3
4,693,962	-		LU632_RS24635	0.35	+0.8
4,693,962	-		LU632_RS24635	0.35	-1.7
4,693,994	-		LU632_RS24635	0.43	+1.8
4,694,020	+		LU632_RS24635	0.49	-0.2
4,694,136	+		LU632_RS24635	0.75	+1.9
4,694,137	-		LU632_RS24635	0.76	+0.8
4,694,137	-		LU632_RS24635	0.76	-0.3
4,694,139	+		LU632_RS24635	0.76	-0.4
4,694,140	-		LU632_RS24635	0.76	-1.8
4,694,169	+		LU632_RS24635	0.83	-1.0
4,694,170	-		LU632_RS24635	0.83	+0.9
4,694,216	+				+1.0
4,694,217	-				-1.4
4,694,217	-				-1.6
4,694,273	-				-1.0
4,694,338	+		LU632_RS24640	0.14	+2.6
4,694,339	-		LU632_RS24640	0.14	+1.1
4,694,371	-		LU632_RS24640	0.19	+0.6
4,694,427	+		LU632_RS24640	0.27	-0.1
4,694,457	-		LU632_RS24640	0.31	-0.9
4,694,459	+		LU632_RS24640	0.31	+1.9
4,694,640	+		LU632_RS24640	0.57	+0.3
4,694,718	+		LU632_RS24640	0.68	-0.4
4,694,719	-		LU632_RS24640	0.68	+0.1
4,694,762	+		LU632_RS24640	0.74	-3.5
4,694,763	-		LU632_RS24640	0.74	+0.1
4,694,774	+		LU632_RS24640	0.76	+1.3
4,694,774	+		LU632_RS24640	0.76	+0.2
4,694,774	+		LU632_RS24640	0.76	+0.5
4,694,816	-		LU632_RS24640	0.82	-2.3
4,694,877	+				-1.4
4,694,877	+				+0.8
4,694,895	+				+0.8
4,694,895	+				+0.3
4,695,025	+				+1.2
4,695,025	+				+0.6
4,695,026	-				-0.4
4,695,027	+				+0.5
4,695,027	+				-0.9
4,695,027	+				+0.2
4,695,027	+				+2.1
4,695,027	+				+0.7
4,695,027	+				-1.0
4,695,028	-				+0.7
4,695,028	-				+1.1
4,695,028	-				+0.4
4,695,030	+				+0.4
4,695,030	+				+0.6
4,695,030	+				+0.9
4,695,031	-				+0.8
4,695,031	-				+2.2
4,695,050	+				-1.7
4,695,090	-				-3.1
4,695,090	-				+0.5
4,695,155	-		LU632_RS24645	0.35	-0.7