Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24555

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS24550 and LU632_RS24555 are separated by 256 nucleotidesLU632_RS24555 and LU632_RS24560 overlap by 98 nucleotidesLU632_RS24560 and LU632_RS24565 are separated by 86 nucleotides LU632_RS24550: LU632_RS24550 - IS91 family transposase, at 4,679,728 to 4,680,927 _RS24550 LU632_RS24555: LU632_RS24555 - transposase zinc-binding domain-containing protein, at 4,681,184 to 4,681,732 _RS24555 LU632_RS24560: LU632_RS24560 - transposase, at 4,681,635 to 4,682,408 _RS24560 LU632_RS24565: LU632_RS24565 - hypothetical protein, at 4,682,495 to 4,682,659 _RS24565 Position (kb) 4681 4682Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4681.093 kb on + strandat 4681.093 kb on + strandat 4681.113 kb on - strandat 4682.544 kb on + strand, within LU632_RS24565at 4682.657 kb on + strandat 4682.657 kb on + strandat 4682.658 kb on - strandat 4682.677 kb on + strandat 4682.678 kb on - strandat 4682.678 kb on - strandat 4682.678 kb on - strandat 4682.678 kb on - strandat 4682.689 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
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4,681,093 + +0.1
4,681,093 + +2.1
4,681,113 - +1.2
4,682,544 + LU632_RS24565 0.30 -0.9
4,682,657 + -0.7
4,682,657 + -1.8
4,682,658 - -0.4
4,682,677 + -0.7
4,682,678 - +2.4
4,682,678 - +1.0
4,682,678 - +0.3
4,682,678 - -2.2
4,682,689 - +3.7

Or see this region's nucleotide sequence