Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt corA and LU632_RS24120 are separated by 274 nucleotides LU632_RS24120 and uvrD are separated by 287 nucleotides
LU632_RS24115: corA - magnesium/cobalt transporter CorA, at 4,598,893 to 4,599,846
corA
LU632_RS24120: LU632_RS24120 - WbuC family cupin fold metalloprotein, at 4,600,121 to 4,600,594
_RS24120
LU632_RS24125: uvrD - DNA helicase II, at 4,600,882 to 4,603,044
uvrD
Position (kb) 4600
4601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4599.985 kb on - strand at 4599.987 kb on - strand at 4599.987 kb on - strand at 4600.110 kb on + strand at 4600.129 kb on + strand at 4600.130 kb on - strand at 4600.130 kb on - strand at 4600.130 kb on - strand at 4600.130 kb on - strand at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.262 kb on + strand, within LU632_RS24120 at 4600.263 kb on + strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.263 kb on - strand, within LU632_RS24120 at 4600.264 kb on + strand, within LU632_RS24120 at 4600.389 kb on + strand, within LU632_RS24120 at 4600.475 kb on + strand, within LU632_RS24120 at 4600.549 kb on - strand at 4600.633 kb on + strand at 4600.777 kb on + strand at 4600.777 kb on + strand at 4600.778 kb on - strand at 4600.924 kb on - strand at 4600.992 kb on + strand at 4600.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 4,599,985 - -1.9 4,599,987 - -2.8 4,599,987 - +0.8 4,600,110 + +0.8 4,600,129 + +0.6 4,600,130 - +0.8 4,600,130 - -1.9 4,600,130 - -1.1 4,600,130 - -2.7 4,600,262 + LU632_RS24120 0.30 -2.3 4,600,262 + LU632_RS24120 0.30 -1.4 4,600,262 + LU632_RS24120 0.30 +1.3 4,600,262 + LU632_RS24120 0.30 -2.7 4,600,262 + LU632_RS24120 0.30 +1.0 4,600,262 + LU632_RS24120 0.30 -2.5 4,600,262 + LU632_RS24120 0.30 +1.6 4,600,262 + LU632_RS24120 0.30 +1.4 4,600,262 + LU632_RS24120 0.30 +0.3 4,600,262 + LU632_RS24120 0.30 +1.0 4,600,262 + LU632_RS24120 0.30 -1.6 4,600,262 + LU632_RS24120 0.30 -1.2 4,600,262 + LU632_RS24120 0.30 +1.1 4,600,263 + LU632_RS24120 0.30 -0.4 4,600,263 - LU632_RS24120 0.30 +0.2 4,600,263 - LU632_RS24120 0.30 +1.9 4,600,263 - LU632_RS24120 0.30 +0.8 4,600,263 - LU632_RS24120 0.30 -1.6 4,600,263 - LU632_RS24120 0.30 +0.5 4,600,263 - LU632_RS24120 0.30 +1.1 4,600,263 - LU632_RS24120 0.30 -0.0 4,600,263 - LU632_RS24120 0.30 -0.6 4,600,263 - LU632_RS24120 0.30 +0.5 4,600,263 - LU632_RS24120 0.30 +0.5 4,600,263 - LU632_RS24120 0.30 -0.0 4,600,263 - LU632_RS24120 0.30 +2.0 4,600,263 - LU632_RS24120 0.30 -0.1 4,600,263 - LU632_RS24120 0.30 +1.9 4,600,263 - LU632_RS24120 0.30 -0.6 4,600,263 - LU632_RS24120 0.30 +0.3 4,600,263 - LU632_RS24120 0.30 -0.1 4,600,263 - LU632_RS24120 0.30 +0.4 4,600,263 - LU632_RS24120 0.30 +1.9 4,600,264 + LU632_RS24120 0.30 +2.9 4,600,389 + LU632_RS24120 0.57 +0.1 4,600,475 + LU632_RS24120 0.75 +2.4 4,600,549 - +1.7 4,600,633 + -0.2 4,600,777 + +0.4 4,600,777 + -0.6 4,600,778 - -0.3 4,600,924 - +0.1 4,600,992 + -2.6 4,600,993 - +0.4
Or see this region's nucleotide sequence