Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tatB and tatA are separated by 3 nucleotides tatA and ubiB are separated by 115 nucleotides ubiB and LU632_RS24000 overlap by 4 nucleotides LU632_RS24000 and ubiE are separated by 12 nucleotides
LU632_RS23985: tatB - Sec-independent protein translocase protein TatB, at 4,572,834 to 4,573,481
tatB
LU632_RS23990: tatA - twin-arginine translocase TatA/TatE family subunit, at 4,573,485 to 4,573,733
tatA
LU632_RS23995: ubiB - ubiquinone biosynthesis regulatory protein kinase UbiB, at 4,573,849 to 4,575,486
ubiB
LU632_RS24000: LU632_RS24000 - SCP2 domain-containing protein, at 4,575,483 to 4,576,088
_RS24000
LU632_RS24005: ubiE - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 4,576,101 to 4,576,856
ubiE
Position (kb) 4573
4574
4575
4576 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 4572.959 kb on + strand, within tatB at 4573.148 kb on + strand, within tatB at 4573.194 kb on - strand, within tatB at 4573.195 kb on + strand, within tatB at 4573.196 kb on - strand, within tatB at 4573.196 kb on - strand, within tatB at 4573.196 kb on - strand, within tatB at 4573.248 kb on - strand, within tatB at 4573.320 kb on + strand, within tatB at 4573.423 kb on - strand at 4573.452 kb on + strand at 4573.471 kb on - strand at 4573.487 kb on - strand at 4573.661 kb on + strand, within tatA at 4573.662 kb on - strand, within tatA at 4573.722 kb on - strand at 4573.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 4,572,959 + tatB LU632_RS23985 0.19 -3.4 4,573,148 + tatB LU632_RS23985 0.48 -2.9 4,573,194 - tatB LU632_RS23985 0.56 -5.9 4,573,195 + tatB LU632_RS23985 0.56 -5.3 4,573,196 - tatB LU632_RS23985 0.56 +0.1 4,573,196 - tatB LU632_RS23985 0.56 -0.8 4,573,196 - tatB LU632_RS23985 0.56 -1.1 4,573,248 - tatB LU632_RS23985 0.64 -0.7 4,573,320 + tatB LU632_RS23985 0.75 -4.5 4,573,423 - -4.9 4,573,452 + -4.9 4,573,471 - -5.9 4,573,487 - -4.2 4,573,661 + tatA LU632_RS23990 0.71 -3.8 4,573,662 - tatA LU632_RS23990 0.71 +0.6 4,573,722 - -0.4 4,573,776 - +0.2
Or see this region's nucleotide sequence