Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22920

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
4,365,409	+				+0.4
4,365,476	+				+0.8
4,365,476	+				+0.1
4,365,482	-				+0.9
4,365,523	-				-2.2
4,365,567	+				-0.0
4,365,568	-				-1.6
4,365,568	-				-1.2
4,365,654	+	hslR	LU632_RS22920	0.15	-0.5
4,365,705	+	hslR	LU632_RS22920	0.28	-2.5
4,365,705	+	hslR	LU632_RS22920	0.28	+2.2
4,365,705	+	hslR	LU632_RS22920	0.28	-2.6
4,365,705	+	hslR	LU632_RS22920	0.28	+1.8
4,365,705	+	hslR	LU632_RS22920	0.28	+0.3
4,365,739	+	hslR	LU632_RS22920	0.36	-0.8
4,365,739	+	hslR	LU632_RS22920	0.36	-0.1
4,365,847	-	hslR	LU632_RS22920	0.63	-0.6
4,365,847	-	hslR	LU632_RS22920	0.63	+1.2
4,366,018	-				-0.2
4,366,060	+				-1.9
4,366,060	+				+0.1
4,366,060	+				+1.1
4,366,223	+	hslO	LU632_RS22925	0.23	+0.8
4,366,444	+	hslO	LU632_RS22925	0.48	+0.2
4,366,445	-	hslO	LU632_RS22925	0.49	-1.1
4,366,445	-	hslO	LU632_RS22925	0.49	+1.1
4,366,483	-	hslO	LU632_RS22925	0.53	-0.6
4,366,620	-	hslO	LU632_RS22925	0.68	+0.1
4,366,640	+	hslO	LU632_RS22925	0.71	-1.0
4,366,641	-	hslO	LU632_RS22925	0.71	-1.6
4,366,739	+	hslO	LU632_RS22925	0.82	-1.6
4,366,964	-				-1.9