Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tsgA and LU632_RS22830 are separated by 45 nucleotides LU632_RS22830 and LU632_RS22835 are separated by 164 nucleotides LU632_RS22835 and trpS are separated by 38 nucleotides
LU632_RS22825: tsgA - MFS transporter TsgA, at 4,345,698 to 4,346,882
tsgA
LU632_RS22830: LU632_RS22830 - cytosine deaminase, at 4,346,928 to 4,348,205
_RS22830
LU632_RS22835: LU632_RS22835 - hypothetical protein, at 4,348,370 to 4,348,807
_RS22835
LU632_RS22840: trpS - tryptophan--tRNA ligase, at 4,348,846 to 4,349,850
trpS
Position (kb) 4346
4347
4348
4349 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4345.943 kb on - strand, within tsgA at 4345.943 kb on - strand, within tsgA at 4346.011 kb on + strand, within tsgA at 4346.012 kb on - strand, within tsgA at 4346.020 kb on + strand, within tsgA at 4346.021 kb on - strand, within tsgA at 4346.070 kb on + strand, within tsgA at 4346.194 kb on - strand, within tsgA at 4346.201 kb on + strand, within tsgA at 4346.207 kb on - strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.346 kb on + strand, within tsgA at 4346.347 kb on - strand, within tsgA at 4346.347 kb on - strand, within tsgA at 4346.389 kb on - strand, within tsgA at 4346.397 kb on - strand, within tsgA at 4346.457 kb on + strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.458 kb on - strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.459 kb on + strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.460 kb on - strand, within tsgA at 4346.513 kb on + strand, within tsgA at 4346.519 kb on + strand, within tsgA at 4346.553 kb on + strand, within tsgA at 4346.567 kb on + strand, within tsgA at 4346.597 kb on + strand, within tsgA at 4346.627 kb on + strand, within tsgA at 4346.627 kb on + strand, within tsgA at 4346.628 kb on - strand, within tsgA at 4346.631 kb on + strand, within tsgA at 4346.631 kb on + strand, within tsgA at 4346.787 kb on - strand at 4346.816 kb on + strand at 4346.816 kb on + strand at 4346.816 kb on + strand at 4346.817 kb on - strand at 4346.817 kb on - strand at 4346.891 kb on - strand at 4346.965 kb on + strand at 4347.023 kb on - strand at 4347.108 kb on - strand, within LU632_RS22830 at 4347.108 kb on - strand, within LU632_RS22830 at 4347.108 kb on - strand, within LU632_RS22830 at 4347.126 kb on + strand, within LU632_RS22830 at 4347.126 kb on + strand, within LU632_RS22830 at 4347.127 kb on - strand, within LU632_RS22830 at 4347.127 kb on - strand, within LU632_RS22830 at 4347.132 kb on + strand, within LU632_RS22830 at 4347.132 kb on + strand, within LU632_RS22830 at 4347.220 kb on + strand, within LU632_RS22830 at 4347.221 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.232 kb on - strand, within LU632_RS22830 at 4347.252 kb on - strand, within LU632_RS22830 at 4347.344 kb on + strand, within LU632_RS22830 at 4347.344 kb on + strand, within LU632_RS22830 at 4347.349 kb on - strand, within LU632_RS22830 at 4347.349 kb on - strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.438 kb on + strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.439 kb on - strand, within LU632_RS22830 at 4347.440 kb on + strand, within LU632_RS22830 at 4347.440 kb on + strand, within LU632_RS22830 at 4347.453 kb on - strand, within LU632_RS22830 at 4347.582 kb on + strand, within LU632_RS22830 at 4347.583 kb on - strand, within LU632_RS22830 at 4347.583 kb on - strand, within LU632_RS22830 at 4347.587 kb on + strand, within LU632_RS22830 at 4347.587 kb on + strand, within LU632_RS22830 at 4347.590 kb on + strand, within LU632_RS22830 at 4347.591 kb on - strand, within LU632_RS22830 at 4347.591 kb on - strand, within LU632_RS22830 at 4347.741 kb on - strand, within LU632_RS22830 at 4347.907 kb on + strand, within LU632_RS22830 at 4347.922 kb on + strand, within LU632_RS22830 at 4347.922 kb on + strand, within LU632_RS22830 at 4347.923 kb on - strand, within LU632_RS22830 at 4347.923 kb on - strand, within LU632_RS22830 at 4348.012 kb on - strand, within LU632_RS22830 at 4348.138 kb on - strand at 4348.193 kb on + strand at 4348.237 kb on + strand at 4348.237 kb on + strand at 4348.244 kb on + strand at 4348.270 kb on - strand at 4348.331 kb on - strand at 4348.331 kb on - strand at 4348.334 kb on + strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.335 kb on - strand at 4348.370 kb on - strand at 4348.408 kb on - strand at 4348.408 kb on - strand at 4348.408 kb on - strand at 4348.408 kb on - strand at 4348.412 kb on + strand at 4348.412 kb on + strand at 4348.476 kb on + strand, within LU632_RS22835 at 4348.476 kb on + strand, within LU632_RS22835 at 4348.477 kb on - strand, within LU632_RS22835 at 4348.480 kb on + strand, within LU632_RS22835 at 4348.481 kb on - strand, within LU632_RS22835 at 4348.481 kb on - strand, within LU632_RS22835 at 4348.481 kb on - strand, within LU632_RS22835 at 4348.526 kb on + strand, within LU632_RS22835 at 4348.526 kb on + strand, within LU632_RS22835 at 4348.526 kb on + strand, within LU632_RS22835 at 4348.527 kb on - strand, within LU632_RS22835 at 4348.565 kb on - strand, within LU632_RS22835 at 4348.662 kb on + strand, within LU632_RS22835 at 4348.662 kb on + strand, within LU632_RS22835 at 4348.662 kb on + strand, within LU632_RS22835 at 4348.663 kb on - strand, within LU632_RS22835 at 4348.663 kb on - strand, within LU632_RS22835 at 4348.668 kb on - strand, within LU632_RS22835 at 4348.770 kb on - strand at 4348.785 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 4,345,943 - tsgA LU632_RS22825 0.21 -1.0 4,345,943 - tsgA LU632_RS22825 0.21 +0.2 4,346,011 + tsgA LU632_RS22825 0.26 +1.1 4,346,012 - tsgA LU632_RS22825 0.26 -1.0 4,346,020 + tsgA LU632_RS22825 0.27 +0.4 4,346,021 - tsgA LU632_RS22825 0.27 -0.2 4,346,070 + tsgA LU632_RS22825 0.31 +2.4 4,346,194 - tsgA LU632_RS22825 0.42 -1.6 4,346,201 + tsgA LU632_RS22825 0.42 -0.9 4,346,207 - tsgA LU632_RS22825 0.43 +0.1 4,346,346 + tsgA LU632_RS22825 0.55 -0.4 4,346,346 + tsgA LU632_RS22825 0.55 +0.4 4,346,346 + tsgA LU632_RS22825 0.55 +0.5 4,346,347 - tsgA LU632_RS22825 0.55 -0.6 4,346,347 - tsgA LU632_RS22825 0.55 -1.5 4,346,389 - tsgA LU632_RS22825 0.58 -1.3 4,346,397 - tsgA LU632_RS22825 0.59 -2.1 4,346,457 + tsgA LU632_RS22825 0.64 +0.4 4,346,458 - tsgA LU632_RS22825 0.64 +2.2 4,346,458 - tsgA LU632_RS22825 0.64 +1.3 4,346,458 - tsgA LU632_RS22825 0.64 -0.3 4,346,459 + tsgA LU632_RS22825 0.64 -0.7 4,346,459 + tsgA LU632_RS22825 0.64 +0.8 4,346,459 + tsgA LU632_RS22825 0.64 +0.6 4,346,459 + tsgA LU632_RS22825 0.64 -1.0 4,346,460 - tsgA LU632_RS22825 0.64 -1.4 4,346,460 - tsgA LU632_RS22825 0.64 -0.8 4,346,460 - tsgA LU632_RS22825 0.64 +0.1 4,346,460 - tsgA LU632_RS22825 0.64 -0.2 4,346,513 + tsgA LU632_RS22825 0.69 -1.6 4,346,519 + tsgA LU632_RS22825 0.69 -0.1 4,346,553 + tsgA LU632_RS22825 0.72 -0.5 4,346,567 + tsgA LU632_RS22825 0.73 -1.1 4,346,597 + tsgA LU632_RS22825 0.76 -0.2 4,346,627 + tsgA LU632_RS22825 0.78 -0.8 4,346,627 + tsgA LU632_RS22825 0.78 +0.5 4,346,628 - tsgA LU632_RS22825 0.78 +0.1 4,346,631 + tsgA LU632_RS22825 0.79 -0.2 4,346,631 + tsgA LU632_RS22825 0.79 -3.1 4,346,787 - -1.1 4,346,816 + -0.7 4,346,816 + -1.2 4,346,816 + -1.0 4,346,817 - +0.8 4,346,817 - -0.4 4,346,891 - -0.1 4,346,965 + +2.3 4,347,023 - -1.3 4,347,108 - LU632_RS22830 0.14 +0.7 4,347,108 - LU632_RS22830 0.14 -1.5 4,347,108 - LU632_RS22830 0.14 -0.3 4,347,126 + LU632_RS22830 0.15 -0.6 4,347,126 + LU632_RS22830 0.15 -1.0 4,347,127 - LU632_RS22830 0.16 +0.2 4,347,127 - LU632_RS22830 0.16 +0.8 4,347,132 + LU632_RS22830 0.16 +0.2 4,347,132 + LU632_RS22830 0.16 -0.1 4,347,220 + LU632_RS22830 0.23 +2.0 4,347,221 - LU632_RS22830 0.23 +1.8 4,347,232 - LU632_RS22830 0.24 +0.4 4,347,232 - LU632_RS22830 0.24 -1.4 4,347,232 - LU632_RS22830 0.24 -0.7 4,347,252 - LU632_RS22830 0.25 +0.5 4,347,344 + LU632_RS22830 0.33 -0.9 4,347,344 + LU632_RS22830 0.33 +0.7 4,347,349 - LU632_RS22830 0.33 +0.4 4,347,349 - LU632_RS22830 0.33 +0.1 4,347,438 + LU632_RS22830 0.40 +1.0 4,347,438 + LU632_RS22830 0.40 +0.6 4,347,438 + LU632_RS22830 0.40 +0.4 4,347,438 + LU632_RS22830 0.40 -0.3 4,347,438 + LU632_RS22830 0.40 +0.8 4,347,438 + LU632_RS22830 0.40 -0.4 4,347,439 - LU632_RS22830 0.40 -1.1 4,347,439 - LU632_RS22830 0.40 +0.8 4,347,439 - LU632_RS22830 0.40 -0.2 4,347,440 + LU632_RS22830 0.40 -1.3 4,347,440 + LU632_RS22830 0.40 -0.0 4,347,453 - LU632_RS22830 0.41 -0.4 4,347,582 + LU632_RS22830 0.51 -3.0 4,347,583 - LU632_RS22830 0.51 -0.2 4,347,583 - LU632_RS22830 0.51 +2.0 4,347,587 + LU632_RS22830 0.52 +1.8 4,347,587 + LU632_RS22830 0.52 -0.2 4,347,590 + LU632_RS22830 0.52 +1.2 4,347,591 - LU632_RS22830 0.52 +1.2 4,347,591 - LU632_RS22830 0.52 +4.3 4,347,741 - LU632_RS22830 0.64 +1.0 4,347,907 + LU632_RS22830 0.77 +1.3 4,347,922 + LU632_RS22830 0.78 -0.8 4,347,922 + LU632_RS22830 0.78 +1.8 4,347,923 - LU632_RS22830 0.78 +0.4 4,347,923 - LU632_RS22830 0.78 +0.5 4,348,012 - LU632_RS22830 0.85 -0.9 4,348,138 - -1.6 4,348,193 + -2.2 4,348,237 + -2.4 4,348,237 + -1.6 4,348,244 + -0.4 4,348,270 - -0.2 4,348,331 - -2.6 4,348,331 - +0.2 4,348,334 + -2.2 4,348,335 - -0.2 4,348,335 - -2.4 4,348,335 - +3.2 4,348,335 - -0.9 4,348,335 - -0.8 4,348,335 - +0.5 4,348,370 - -0.7 4,348,408 - +0.9 4,348,408 - +2.0 4,348,408 - -0.4 4,348,408 - +0.2 4,348,412 + -0.9 4,348,412 + -0.2 4,348,476 + LU632_RS22835 0.24 +1.3 4,348,476 + LU632_RS22835 0.24 -0.8 4,348,477 - LU632_RS22835 0.24 -2.6 4,348,480 + LU632_RS22835 0.25 +1.1 4,348,481 - LU632_RS22835 0.25 -0.1 4,348,481 - LU632_RS22835 0.25 -0.1 4,348,481 - LU632_RS22835 0.25 -0.2 4,348,526 + LU632_RS22835 0.36 +2.7 4,348,526 + LU632_RS22835 0.36 +0.4 4,348,526 + LU632_RS22835 0.36 +2.8 4,348,527 - LU632_RS22835 0.36 -1.8 4,348,565 - LU632_RS22835 0.45 +1.2 4,348,662 + LU632_RS22835 0.67 -1.8 4,348,662 + LU632_RS22835 0.67 -0.9 4,348,662 + LU632_RS22835 0.67 +0.7 4,348,663 - LU632_RS22835 0.67 -0.5 4,348,663 - LU632_RS22835 0.67 -1.4 4,348,668 - LU632_RS22835 0.68 -2.5 4,348,770 - +0.5 4,348,785 + +1.0
Or see this region's nucleotide sequence