Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22350 and LU632_RS22355 overlap by 4 nucleotides LU632_RS22355 and LU632_RS22360 are separated by 79 nucleotides LU632_RS22360 and pgi are separated by 541 nucleotides
LU632_RS22350: LU632_RS22350 - capsule biosynthesis GfcC family protein, at 4,268,825 to 4,269,580
_RS22350
LU632_RS22355: LU632_RS22355 - YjbF family lipoprotein, at 4,269,577 to 4,270,224
_RS22355
LU632_RS22360: LU632_RS22360 - exopolysaccharide production protein YjbE, at 4,270,304 to 4,270,561
_RS22360
LU632_RS22365: pgi - glucose-6-phosphate isomerase, at 4,271,103 to 4,272,752
pgi
Position (kb) 4270
4271 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4269.309 kb on - strand, within LU632_RS22350 at 4269.309 kb on - strand, within LU632_RS22350 at 4269.309 kb on - strand, within LU632_RS22350 at 4269.539 kb on - strand at 4269.682 kb on + strand, within LU632_RS22355 at 4269.682 kb on + strand, within LU632_RS22355 at 4270.067 kb on + strand, within LU632_RS22355 at 4270.067 kb on + strand, within LU632_RS22355 at 4270.068 kb on - strand, within LU632_RS22355 at 4270.108 kb on + strand, within LU632_RS22355 at 4270.156 kb on - strand, within LU632_RS22355 at 4270.198 kb on + strand at 4270.198 kb on + strand at 4270.199 kb on - strand at 4270.214 kb on - strand at 4270.214 kb on - strand at 4270.215 kb on + strand at 4270.217 kb on + strand at 4270.217 kb on + strand at 4270.218 kb on - strand at 4270.218 kb on - strand at 4270.257 kb on + strand at 4270.285 kb on + strand at 4270.291 kb on + strand at 4270.296 kb on + strand at 4270.296 kb on + strand at 4270.524 kb on + strand, within LU632_RS22360 at 4270.524 kb on + strand, within LU632_RS22360 at 4270.525 kb on - strand, within LU632_RS22360 at 4270.527 kb on - strand, within LU632_RS22360 at 4270.717 kb on - strand at 4271.009 kb on - strand at 4271.009 kb on - strand at 4271.249 kb on + strand at 4271.250 kb on - strand at 4271.287 kb on + strand, within pgi at 4271.385 kb on - strand, within pgi
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 4,269,309 - LU632_RS22350 0.64 -0.6 4,269,309 - LU632_RS22350 0.64 +0.1 4,269,309 - LU632_RS22350 0.64 -1.2 4,269,539 - -1.7 4,269,682 + LU632_RS22355 0.16 -0.6 4,269,682 + LU632_RS22355 0.16 -0.4 4,270,067 + LU632_RS22355 0.76 -3.2 4,270,067 + LU632_RS22355 0.76 -0.4 4,270,068 - LU632_RS22355 0.76 -0.4 4,270,108 + LU632_RS22355 0.82 -0.8 4,270,156 - LU632_RS22355 0.89 -0.8 4,270,198 + -1.0 4,270,198 + -0.7 4,270,199 - -0.3 4,270,214 - -0.4 4,270,214 - -2.0 4,270,215 + -1.0 4,270,217 + +0.2 4,270,217 + -0.5 4,270,218 - -0.9 4,270,218 - +0.5 4,270,257 + -0.6 4,270,285 + -0.4 4,270,291 + -0.5 4,270,296 + -2.2 4,270,296 + -1.1 4,270,524 + LU632_RS22360 0.85 +0.0 4,270,524 + LU632_RS22360 0.85 -0.6 4,270,525 - LU632_RS22360 0.86 -0.2 4,270,527 - LU632_RS22360 0.86 -0.3 4,270,717 - +0.4 4,271,009 - +0.1 4,271,009 - -0.6 4,271,249 + +0.5 4,271,250 - +0.7 4,271,287 + pgi LU632_RS22365 0.11 -0.1 4,271,385 - pgi LU632_RS22365 0.17 +0.2
Or see this region's nucleotide sequence