Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22250 and LU632_RS22255 are separated by 110 nucleotides LU632_RS22255 and LU632_RS22260 are separated by 558 nucleotides LU632_RS22260 and LU632_RS22265 are separated by 95 nucleotides LU632_RS22265 and LU632_RS22270 are separated by 16 nucleotides
LU632_RS22250: LU632_RS22250 - helix-turn-helix domain-containing protein, at 4,253,464 to 4,253,715
_RS22250
LU632_RS22255: LU632_RS22255 - helix-turn-helix domain-containing protein, at 4,253,826 to 4,254,101
_RS22255
LU632_RS22260: LU632_RS22260 - DUF943 family protein, at 4,254,660 to 4,254,953
_RS22260
LU632_RS22265: LU632_RS22265 - IS1 family transposase, at 4,255,049 to 4,255,746
_RS22265
LU632_RS22270: LU632_RS22270 - hypothetical protein, at 4,255,763 to 4,255,921
_RS22270
Position (kb) 4254
4255 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4253.729 kb on + strand at 4253.730 kb on - strand at 4253.730 kb on - strand at 4253.733 kb on + strand at 4253.823 kb on + strand at 4253.824 kb on - strand at 4253.826 kb on - strand at 4253.850 kb on + strand at 4253.864 kb on + strand, within LU632_RS22255 at 4253.864 kb on + strand, within LU632_RS22255 at 4253.868 kb on + strand, within LU632_RS22255 at 4253.869 kb on - strand, within LU632_RS22255 at 4253.869 kb on - strand, within LU632_RS22255 at 4254.036 kb on + strand, within LU632_RS22255 at 4254.036 kb on + strand, within LU632_RS22255 at 4254.036 kb on + strand, within LU632_RS22255 at 4254.080 kb on + strand at 4254.080 kb on + strand at 4254.081 kb on - strand at 4254.116 kb on + strand at 4254.116 kb on + strand at 4254.116 kb on + strand at 4254.167 kb on + strand at 4254.168 kb on - strand at 4254.168 kb on - strand at 4254.188 kb on + strand at 4254.189 kb on - strand at 4254.193 kb on - strand at 4254.219 kb on - strand at 4254.231 kb on + strand at 4254.337 kb on - strand at 4254.399 kb on + strand at 4254.399 kb on + strand at 4254.423 kb on + strand at 4254.424 kb on - strand at 4254.424 kb on - strand at 4254.566 kb on + strand at 4254.580 kb on - strand at 4254.598 kb on + strand at 4254.630 kb on + strand at 4254.631 kb on - strand at 4254.631 kb on - strand at 4254.686 kb on + strand at 4254.706 kb on + strand, within LU632_RS22260 at 4254.707 kb on - strand, within LU632_RS22260 at 4254.782 kb on + strand, within LU632_RS22260 at 4254.844 kb on + strand, within LU632_RS22260 at 4254.844 kb on + strand, within LU632_RS22260 at 4254.844 kb on + strand, within LU632_RS22260 at 4254.875 kb on + strand, within LU632_RS22260 at 4254.911 kb on - strand, within LU632_RS22260 at 4254.926 kb on + strand at 4254.927 kb on - strand at 4254.927 kb on - strand at 4254.968 kb on + strand at 4254.969 kb on - strand at 4254.970 kb on + strand at 4254.987 kb on + strand at 4255.772 kb on + strand at 4255.772 kb on + strand at 4255.858 kb on + strand, within LU632_RS22270 at 4255.859 kb on - strand, within LU632_RS22270 at 4255.859 kb on - strand, within LU632_RS22270
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 4,253,729 + -0.1 4,253,730 - -2.0 4,253,730 - +0.3 4,253,733 + -1.5 4,253,823 + -1.5 4,253,824 - +1.8 4,253,826 - -1.2 4,253,850 + +0.5 4,253,864 + LU632_RS22255 0.14 -0.1 4,253,864 + LU632_RS22255 0.14 +1.4 4,253,868 + LU632_RS22255 0.15 +0.7 4,253,869 - LU632_RS22255 0.16 +0.0 4,253,869 - LU632_RS22255 0.16 +1.8 4,254,036 + LU632_RS22255 0.76 -2.9 4,254,036 + LU632_RS22255 0.76 +0.3 4,254,036 + LU632_RS22255 0.76 +0.4 4,254,080 + -2.5 4,254,080 + -0.7 4,254,081 - +0.1 4,254,116 + +0.0 4,254,116 + -0.2 4,254,116 + -1.4 4,254,167 + -0.7 4,254,168 - -2.4 4,254,168 - -1.9 4,254,188 + -1.0 4,254,189 - +0.1 4,254,193 - -0.6 4,254,219 - +0.3 4,254,231 + +0.3 4,254,337 - +2.9 4,254,399 + +0.2 4,254,399 + -1.5 4,254,423 + -1.9 4,254,424 - -0.4 4,254,424 - -0.0 4,254,566 + -1.5 4,254,580 - +0.5 4,254,598 + +1.2 4,254,630 + -0.8 4,254,631 - -2.6 4,254,631 - -1.0 4,254,686 + +1.5 4,254,706 + LU632_RS22260 0.16 +0.5 4,254,707 - LU632_RS22260 0.16 +1.0 4,254,782 + LU632_RS22260 0.41 +0.0 4,254,844 + LU632_RS22260 0.63 +0.1 4,254,844 + LU632_RS22260 0.63 -1.4 4,254,844 + LU632_RS22260 0.63 +0.5 4,254,875 + LU632_RS22260 0.73 +0.6 4,254,911 - LU632_RS22260 0.85 -3.4 4,254,926 + +0.2 4,254,927 - -0.3 4,254,927 - -0.6 4,254,968 + +0.1 4,254,969 - -0.1 4,254,970 + +0.7 4,254,987 + -0.3 4,255,772 + -1.4 4,255,772 + -0.4 4,255,858 + LU632_RS22270 0.60 +0.4 4,255,859 - LU632_RS22270 0.60 +1.8 4,255,859 - LU632_RS22270 0.60 -1.1
Or see this region's nucleotide sequence