Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21910

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
4,183,951	-		LU632_RS21905	0.20	-0.1
4,183,999	+		LU632_RS21905	0.25	-1.7
4,184,093	+		LU632_RS21905	0.33	+0.4
4,184,093	+		LU632_RS21905	0.33	+1.3
4,184,093	+		LU632_RS21905	0.33	+0.6
4,184,093	+		LU632_RS21905	0.33	+0.5
4,184,093	+		LU632_RS21905	0.33	+1.5
4,184,093	+		LU632_RS21905	0.33	-1.8
4,184,093	+		LU632_RS21905	0.33	-1.5
4,184,093	+		LU632_RS21905	0.33	+0.1
4,184,094	-		LU632_RS21905	0.33	+2.0
4,184,094	-		LU632_RS21905	0.33	-2.4
4,184,094	-		LU632_RS21905	0.33	+2.0
4,184,094	-		LU632_RS21905	0.33	-1.0
4,184,094	-		LU632_RS21905	0.33	+0.4
4,184,094	-		LU632_RS21905	0.33	-1.8
4,184,094	-		LU632_RS21905	0.33	-2.7
4,184,094	-		LU632_RS21905	0.33	-1.3
4,184,094	-		LU632_RS21905	0.33	-0.8
4,184,095	+		LU632_RS21905	0.33	+0.5
4,184,095	+		LU632_RS21905	0.33	-1.2
4,184,096	-		LU632_RS21905	0.33	+0.8
4,184,116	+		LU632_RS21905	0.34	+0.3
4,184,130	-		LU632_RS21905	0.36	+0.1
4,184,164	-		LU632_RS21905	0.39	-0.2
4,184,269	-		LU632_RS21905	0.47	+0.6
4,184,343	+		LU632_RS21905	0.54	-1.9
4,184,368	-		LU632_RS21905	0.56	-0.5
4,184,439	-		LU632_RS21905	0.62	+0.4
4,184,439	-		LU632_RS21905	0.62	-1.4
4,184,531	-		LU632_RS21905	0.70	+1.8
4,184,533	-		LU632_RS21905	0.70	+0.6
4,184,572	+		LU632_RS21905	0.73	-0.6
4,184,869	-				+0.1
4,184,883	+				+1.1
4,184,883	+				-4.3
4,184,883	+				-1.4
4,184,884	-				+0.0
4,184,923	-				-0.2
4,184,923	-				-0.0
4,184,923	-				+0.1
4,184,923	-				-2.1
4,184,923	-				+1.1
4,184,923	-				-0.2
4,184,943	+				-0.3
4,185,003	+				-1.7
4,185,038	+		LU632_RS21910	0.11	-1.3
4,185,065	-		LU632_RS21910	0.14	+0.4
4,185,083	+		LU632_RS21910	0.16	+0.2
4,185,224	-		LU632_RS21910	0.31	-0.2
4,185,224	-		LU632_RS21910	0.31	+0.8
4,185,242	-		LU632_RS21910	0.33	-0.3
4,185,242	-		LU632_RS21910	0.33	-0.3
4,185,255	-		LU632_RS21910	0.35	-2.0
4,185,360	+		LU632_RS21910	0.46	-0.5
4,185,360	+		LU632_RS21910	0.46	-0.2
4,185,360	+		LU632_RS21910	0.46	+0.3
4,185,360	+		LU632_RS21910	0.46	-1.9
4,185,360	+		LU632_RS21910	0.46	-3.2
4,185,361	-		LU632_RS21910	0.46	-0.0
4,185,361	-		LU632_RS21910	0.46	-0.2
4,185,361	-		LU632_RS21910	0.46	+0.6
4,185,364	+		LU632_RS21910	0.47	-0.2
4,185,365	-		LU632_RS21910	0.47	+0.5
4,185,433	+		LU632_RS21910	0.54	-0.8
4,185,474	+		LU632_RS21910	0.59	+1.4
4,185,618	-		LU632_RS21910	0.75	+0.2
4,185,687	+		LU632_RS21910	0.82	+2.2
4,185,688	-		LU632_RS21910	0.82	+1.5
4,185,754	+		LU632_RS21910	0.89	+1.0
4,185,786	+				+0.4
4,185,786	+				+1.0
4,185,787	-				+0.9
4,185,799	+				-0.5
4,185,817	+				+1.5
4,185,907	+				-0.4
4,186,454	+	rfaD	LU632_RS21915	0.52	-0.2
4,186,836	+				-0.8