Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21785 and LU632_RS21790 are separated by 702 nucleotides LU632_RS21790 and LU632_RS21795 are separated by 8 nucleotides LU632_RS21795 and LU632_RS21800 are separated by 289 nucleotides LU632_RS21800 and LU632_RS21805 are separated by 63 nucleotides
LU632_RS21785: LU632_RS21785 - hypothetical protein, at 4,163,068 to 4,163,454
_RS21785
LU632_RS21790: LU632_RS21790 - hypothetical protein, at 4,164,157 to 4,164,345
_RS21790
LU632_RS21795: LU632_RS21795 - IS91 family transposase, at 4,164,354 to 4,165,553
_RS21795
LU632_RS21800: LU632_RS21800 - hypothetical protein, at 4,165,843 to 4,166,016
_RS21800
LU632_RS21805: LU632_RS21805 - IS91 family transposase, at 4,166,080 to 4,167,190
_RS21805
Position (kb) 4164
4165
4166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4163.505 kb on + strand at 4163.509 kb on + strand at 4163.509 kb on + strand at 4163.510 kb on - strand at 4163.510 kb on - strand at 4163.512 kb on - strand at 4163.580 kb on + strand at 4163.612 kb on + strand at 4163.641 kb on - strand at 4163.669 kb on + strand at 4163.715 kb on + strand at 4163.716 kb on - strand at 4163.724 kb on - strand at 4163.737 kb on - strand at 4163.737 kb on - strand at 4163.885 kb on + strand at 4163.885 kb on + strand at 4163.886 kb on - strand at 4163.889 kb on + strand at 4163.890 kb on - strand at 4163.897 kb on - strand at 4163.916 kb on + strand at 4163.917 kb on - strand at 4163.933 kb on + strand at 4163.934 kb on - strand at 4163.942 kb on + strand at 4163.942 kb on + strand at 4164.029 kb on - strand at 4166.285 kb on + strand, within LU632_RS21805 at 4166.285 kb on + strand, within LU632_RS21805
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 4,163,505 + -2.9 4,163,509 + +3.7 4,163,509 + -1.1 4,163,510 - -0.6 4,163,510 - +0.2 4,163,512 - +0.7 4,163,580 + -0.0 4,163,612 + -1.8 4,163,641 - -0.2 4,163,669 + -0.4 4,163,715 + +0.4 4,163,716 - +1.8 4,163,724 - -0.2 4,163,737 - +0.6 4,163,737 - -1.5 4,163,885 + -0.3 4,163,885 + +1.9 4,163,886 - +0.6 4,163,889 + +1.0 4,163,890 - +1.3 4,163,897 - +0.9 4,163,916 + -1.0 4,163,917 - -0.1 4,163,933 + -0.1 4,163,934 - -2.5 4,163,942 + +0.2 4,163,942 + +1.4 4,164,029 - -0.0 4,166,285 + LU632_RS21805 0.18 +0.2 4,166,285 + LU632_RS21805 0.18 +0.1
Or see this region's nucleotide sequence