Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt opgB and LU632_RS21675 overlap by 47 nucleotides LU632_RS21675 and LU632_RS21680 are separated by 197 nucleotides LU632_RS21680 and LU632_RS21685 are separated by 105 nucleotides LU632_RS21685 and LU632_RS21690 are separated by 144 nucleotides
LU632_RS21670: opgB - phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase, at 4,144,322 to 4,146,625
opgB
LU632_RS21675: LU632_RS21675 - hypothetical protein, at 4,146,579 to 4,146,830
_RS21675
LU632_RS21680: LU632_RS21680 - IS1 family transposase, at 4,147,028 to 4,147,724
_RS21680
LU632_RS21685: LU632_RS21685 - IS3 family transposase, at 4,147,830 to 4,148,183
_RS21685
LU632_RS21690: LU632_RS21690 - IS5 family transposase, at 4,148,328 to 4,149,138
_RS21690
Position (kb) 4147
4148 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4146.142 kb on + strand, within opgB at 4146.177 kb on + strand, within opgB at 4146.361 kb on + strand, within opgB at 4146.438 kb on + strand at 4146.573 kb on + strand at 4146.612 kb on - strand at 4146.789 kb on - strand, within LU632_RS21675 at 4146.955 kb on + strand at 4147.791 kb on - strand at 4147.797 kb on - strand at 4147.819 kb on + strand at 4147.819 kb on + strand at 4147.889 kb on + strand, within LU632_RS21685 at 4147.915 kb on - strand, within LU632_RS21685 at 4147.931 kb on + strand, within LU632_RS21685 at 4147.932 kb on - strand, within LU632_RS21685 at 4147.934 kb on + strand, within LU632_RS21685 at 4147.934 kb on + strand, within LU632_RS21685 at 4147.934 kb on + strand, within LU632_RS21685 at 4147.935 kb on - strand, within LU632_RS21685 at 4147.935 kb on - strand, within LU632_RS21685 at 4147.953 kb on - strand, within LU632_RS21685 at 4148.091 kb on - strand, within LU632_RS21685 at 4148.094 kb on + strand, within LU632_RS21685 at 4148.095 kb on - strand, within LU632_RS21685 at 4148.198 kb on + strand at 4148.198 kb on + strand at 4148.199 kb on - strand at 4148.245 kb on + strand at 4148.277 kb on - strand at 4148.287 kb on - strand at 4148.307 kb on + strand at 4148.307 kb on + strand at 4148.308 kb on - strand at 4148.308 kb on - strand at 4148.308 kb on - strand at 4148.321 kb on + strand at 4148.330 kb on - strand at 4148.513 kb on - strand, within LU632_RS21690
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 4,146,142 + opgB LU632_RS21670 0.79 -3.6 4,146,177 + opgB LU632_RS21670 0.81 +0.1 4,146,361 + opgB LU632_RS21670 0.88 -0.2 4,146,438 + +0.8 4,146,573 + -1.8 4,146,612 - +0.3 4,146,789 - LU632_RS21675 0.83 +1.0 4,146,955 + +1.5 4,147,791 - +0.2 4,147,797 - -2.1 4,147,819 + +0.3 4,147,819 + -0.6 4,147,889 + LU632_RS21685 0.17 +0.5 4,147,915 - LU632_RS21685 0.24 +0.2 4,147,931 + LU632_RS21685 0.29 +2.8 4,147,932 - LU632_RS21685 0.29 +0.7 4,147,934 + LU632_RS21685 0.29 -0.6 4,147,934 + LU632_RS21685 0.29 -0.1 4,147,934 + LU632_RS21685 0.29 -1.0 4,147,935 - LU632_RS21685 0.30 +2.4 4,147,935 - LU632_RS21685 0.30 -1.3 4,147,953 - LU632_RS21685 0.35 -2.5 4,148,091 - LU632_RS21685 0.74 +0.2 4,148,094 + LU632_RS21685 0.75 +0.1 4,148,095 - LU632_RS21685 0.75 -0.8 4,148,198 + -2.1 4,148,198 + -1.0 4,148,199 - +0.3 4,148,245 + +0.9 4,148,277 - -1.0 4,148,287 - -2.2 4,148,307 + +0.1 4,148,307 + +0.7 4,148,308 - -2.3 4,148,308 - +0.6 4,148,308 - -0.2 4,148,321 + +1.5 4,148,330 - +1.1 4,148,513 - LU632_RS21690 0.23 +0.2
Or see this region's nucleotide sequence