Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20580

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,917,813	+				-0.7
3,917,866	-				-0.1
3,917,873	+				+1.3
3,917,873	+				-1.1
3,917,889	+				+0.9
3,917,889	+				+0.2
3,918,686	+				-1.5
3,918,687	-				-0.1
3,918,713	-				-2.2
3,918,768	+				-0.8
3,921,040	-				+0.7
3,921,040	-				+1.8
3,921,070	-				-0.6
3,921,070	-				-1.4
3,921,070	-				-0.3
3,921,070	-				-0.9
3,921,223	-		LU632_RS20585	0.11	+0.3
3,921,223	-		LU632_RS20585	0.11	-0.5
3,921,273	+		LU632_RS20585	0.17	-1.4
3,921,274	-		LU632_RS20585	0.17	-1.1
3,921,295	+		LU632_RS20585	0.20	+0.1
3,921,296	-		LU632_RS20585	0.20	+0.8
3,921,296	-		LU632_RS20585	0.20	+0.2
3,921,373	+		LU632_RS20585	0.30	+0.1
3,921,488	+		LU632_RS20585	0.45	+1.0
3,921,488	+		LU632_RS20585	0.45	-2.0
3,921,488	+		LU632_RS20585	0.45	-0.4
3,921,698	-		LU632_RS20585	0.72	-0.5
3,921,756	+		LU632_RS20585	0.80	+0.1
3,921,805	+		LU632_RS20585	0.86	+2.3
3,921,806	-		LU632_RS20585	0.86	-1.3
3,921,809	+		LU632_RS20585	0.87	+1.8
3,921,810	-		LU632_RS20585	0.87	-0.2
3,921,810	-		LU632_RS20585	0.87	+1.8
3,921,810	-		LU632_RS20585	0.87	+0.0
3,921,884	+				+0.6
3,921,906	-				+0.8
3,921,906	-				+0.8
3,921,906	-				-0.9
3,921,963	-				+0.2