Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20010

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,807,480	-	dgt	LU632_RS20005	0.47	-1.0
3,807,512	+	dgt	LU632_RS20005	0.49	+2.7
3,807,513	-	dgt	LU632_RS20005	0.50	-0.6
3,807,514	+	dgt	LU632_RS20005	0.50	-2.4
3,807,515	-	dgt	LU632_RS20005	0.50	+0.1
3,807,515	-	dgt	LU632_RS20005	0.50	-1.5
3,807,515	-	dgt	LU632_RS20005	0.50	-0.7
3,807,515	-	dgt	LU632_RS20005	0.50	+1.7
3,807,535	+	dgt	LU632_RS20005	0.51	+0.4
3,807,535	+	dgt	LU632_RS20005	0.51	-0.2
3,807,592	+	dgt	LU632_RS20005	0.55	+0.3
3,807,663	-	dgt	LU632_RS20005	0.59	+0.8
3,807,664	+	dgt	LU632_RS20005	0.59	+0.2
3,807,665	-	dgt	LU632_RS20005	0.60	-1.2
3,807,668	+	dgt	LU632_RS20005	0.60	+0.5
3,807,669	-	dgt	LU632_RS20005	0.60	+1.7
3,807,669	-	dgt	LU632_RS20005	0.60	+0.9
3,807,669	-	dgt	LU632_RS20005	0.60	-0.0
3,807,669	-	dgt	LU632_RS20005	0.60	+0.2
3,807,691	+	dgt	LU632_RS20005	0.61	-0.1
3,807,691	+	dgt	LU632_RS20005	0.61	-0.4
3,807,691	+	dgt	LU632_RS20005	0.61	-1.3
3,807,692	-	dgt	LU632_RS20005	0.61	+0.0
3,807,701	+	dgt	LU632_RS20005	0.62	-0.5
3,807,716	+	dgt	LU632_RS20005	0.63	+1.7
3,807,717	-	dgt	LU632_RS20005	0.63	-0.0
3,807,777	-	dgt	LU632_RS20005	0.67	-0.0
3,808,025	+	dgt	LU632_RS20005	0.83	-0.3
3,808,025	+	dgt	LU632_RS20005	0.83	-0.8
3,808,299	+				-0.1
3,808,313	-				+1.5
3,808,330	+				-0.4
3,808,331	-				+1.7
3,808,335	+				+0.3
3,808,386	+				-1.0
3,808,386	+				+0.4
3,808,387	-				-0.4
3,808,398	-				+1.5
3,808,411	+				-0.7
3,808,411	+				-0.5
3,808,412	-				+1.3
3,808,418	+				+2.3
3,808,420	+				-2.2
3,808,420	+				+0.0
3,809,145	+				+1.6
3,809,145	+				-1.0
3,809,145	+				-0.8
3,809,145	+				+0.2
3,809,146	-				-1.7
3,809,146	-				+0.2
3,809,146	-				-1.5
3,809,146	-				+1.2
3,809,155	+				+1.5
3,809,156	-				-2.8
3,809,233	+				-1.0
3,809,259	+				+0.1
3,809,394	-				-0.6
3,809,403	+				+2.1
3,809,453	-				-0.1
3,809,478	+				+2.3
3,809,479	-				+0.2
3,809,479	-				-2.8
3,809,526	-				-1.8
3,809,526	-				+0.3
3,809,637	+				-0.3
3,809,691	-				-0.8
3,809,694	+				-1.6
3,809,697	+				-2.2
3,809,698	-				+1.0
3,809,720	+				-0.1
3,809,729	+				+1.7
3,809,806	+				+0.1
3,809,807	-				-0.4
3,809,807	-				+2.9