Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19945

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcdsA and ispU are separated by 18 nucleotidesispU and ispC are separated by 195 nucleotidesispC and frr are separated by 131 nucleotidesfrr and pyrH are separated by 134 nucleotides LU632_RS19935: cdsA - phosphatidate cytidylyltransferase, at 3,791,258 to 3,792,115 cdsA LU632_RS19940: ispU - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 3,792,134 to 3,792,886 ispU LU632_RS19945: ispC - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,793,082 to 3,794,278 ispC LU632_RS19950: frr - ribosome recycling factor, at 3,794,410 to 3,794,967 frr LU632_RS19955: pyrH - UMP kinase, at 3,795,102 to 3,795,827 pyrH Position (kb) 3793 3794 3795Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3792.938 kb on - strandat 3792.938 kb on - strandat 3792.980 kb on - strandat 3793.027 kb on - strandat 3793.027 kb on - strandat 3793.029 kb on - strandat 3793.029 kb on - strandat 3793.035 kb on + strandat 3793.055 kb on - strandat 3793.084 kb on - strandat 3793.084 kb on - strandat 3794.383 kb on - strandat 3795.011 kb on - strandat 3795.027 kb on - strandat 3795.027 kb on - strandat 3795.027 kb on - strandat 3795.055 kb on - strandat 3795.077 kb on - strandat 3795.101 kb on - strandat 3795.103 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
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3,792,938 - +3.1
3,792,938 - +0.5
3,792,980 - +0.3
3,793,027 - +1.0
3,793,027 - +1.7
3,793,029 - -2.6
3,793,029 - -2.3
3,793,035 + -2.4
3,793,055 - -1.0
3,793,084 - +0.0
3,793,084 - +1.5
3,794,383 - +0.1
3,795,011 - -4.4
3,795,027 - +0.3
3,795,027 - -1.6
3,795,027 - -0.9
3,795,055 - -0.9
3,795,077 - +0.7
3,795,101 - -1.2
3,795,103 + +0.4

Or see this region's nucleotide sequence