Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cdsA and ispU are separated by 18 nucleotides ispU and ispC are separated by 195 nucleotides ispC and frr are separated by 131 nucleotides frr and pyrH are separated by 134 nucleotides
LU632_RS19935: cdsA - phosphatidate cytidylyltransferase, at 3,791,258 to 3,792,115
cdsA
LU632_RS19940: ispU - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 3,792,134 to 3,792,886
ispU
LU632_RS19945: ispC - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,793,082 to 3,794,278
ispC
LU632_RS19950: frr - ribosome recycling factor, at 3,794,410 to 3,794,967
frr
LU632_RS19955: pyrH - UMP kinase, at 3,795,102 to 3,795,827
pyrH
Position (kb)
3793
3794
3795 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3792.938 kb on - strand at 3792.938 kb on - strand at 3792.980 kb on - strand at 3793.027 kb on - strand at 3793.027 kb on - strand at 3793.029 kb on - strand at 3793.029 kb on - strand at 3793.035 kb on + strand at 3793.055 kb on - strand at 3793.084 kb on - strand at 3793.084 kb on - strand at 3794.383 kb on - strand at 3795.011 kb on - strand at 3795.027 kb on - strand at 3795.027 kb on - strand at 3795.027 kb on - strand at 3795.055 kb on - strand at 3795.077 kb on - strand at 3795.101 kb on - strand at 3795.103 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 3,792,938 - +3.1 3,792,938 - +0.5 3,792,980 - +0.3 3,793,027 - +1.0 3,793,027 - +1.7 3,793,029 - -2.6 3,793,029 - -2.3 3,793,035 + -2.4 3,793,055 - -1.0 3,793,084 - +0.0 3,793,084 - +1.5 3,794,383 - +0.1 3,795,011 - -4.4 3,795,027 - +0.3 3,795,027 - -1.6 3,795,027 - -0.9 3,795,055 - -0.9 3,795,077 - +0.7 3,795,101 - -1.2 3,795,103 + +0.4
Or see this region's nucleotide sequence