Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19425

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,675,574	+		LU632_RS19420	0.25	-0.4
3,675,616	+		LU632_RS19420	0.29	-0.2
3,675,754	+		LU632_RS19420	0.42	+0.5
3,675,755	-		LU632_RS19420	0.42	+0.2
3,675,817	+		LU632_RS19420	0.48	-0.4
3,675,818	-		LU632_RS19420	0.48	-1.2
3,675,823	-		LU632_RS19420	0.48	+1.7
3,675,921	+		LU632_RS19420	0.58	+0.9
3,675,961	+		LU632_RS19420	0.61	-1.4
3,676,032	-		LU632_RS19420	0.68	+0.2
3,676,032	-		LU632_RS19420	0.68	-0.4
3,676,032	-		LU632_RS19420	0.68	+0.5
3,676,051	+		LU632_RS19420	0.70	-0.5
3,676,112	-		LU632_RS19420	0.76	+0.1
3,676,290	+				-0.7
3,676,334	+				-2.1
3,676,335	-				-1.5
3,676,369	+				-1.8
3,676,410	+				-0.5
3,676,519	+				+2.6
3,676,520	-				-0.7
3,676,520	-				+0.4
3,676,590	+				-0.5
3,676,633	+				+0.1
3,676,637	-				+2.4
3,676,682	-				-1.8
3,676,754	+		LU632_RS19425	0.11	+0.1
3,676,755	-		LU632_RS19425	0.11	-1.2
3,676,781	-		LU632_RS19425	0.12	+0.8
3,676,802	+		LU632_RS19425	0.13	-3.3
3,676,849	-		LU632_RS19425	0.14	-0.4
3,676,849	-		LU632_RS19425	0.14	-2.1
3,676,849	-		LU632_RS19425	0.14	+3.1
3,677,038	+		LU632_RS19425	0.21	+0.3
3,677,180	+		LU632_RS19425	0.26	+0.5
3,677,181	-		LU632_RS19425	0.26	-2.0
3,677,181	-		LU632_RS19425	0.26	+0.7
3,677,245	+		LU632_RS19425	0.28	+0.5
3,677,246	-		LU632_RS19425	0.28	+0.6
3,677,269	+		LU632_RS19425	0.29	-2.5
3,677,314	+		LU632_RS19425	0.31	+0.3
3,677,333	-		LU632_RS19425	0.32	+3.6
3,677,347	+		LU632_RS19425	0.32	+1.5
3,677,378	-		LU632_RS19425	0.33	-0.6
3,677,413	+		LU632_RS19425	0.34	-0.1
3,677,478	+		LU632_RS19425	0.37	+0.1
3,677,478	+		LU632_RS19425	0.37	+0.7
3,677,478	+		LU632_RS19425	0.37	+1.3
3,677,478	+		LU632_RS19425	0.37	-3.3
3,677,479	-		LU632_RS19425	0.37	+2.3
3,677,479	-		LU632_RS19425	0.37	+0.1
3,677,479	-		LU632_RS19425	0.37	+0.1
3,677,668	+		LU632_RS19425	0.44	-2.2
3,677,669	-		LU632_RS19425	0.44	-0.8
3,677,669	-		LU632_RS19425	0.44	-0.2
3,677,777	+		LU632_RS19425	0.48	+0.3
3,677,778	-		LU632_RS19425	0.48	-0.3
3,677,816	-		LU632_RS19425	0.49	+1.4
3,677,902	-		LU632_RS19425	0.52	-0.4
3,677,906	-		LU632_RS19425	0.52	+0.6
3,677,908	+		LU632_RS19425	0.52	-2.2
3,677,953	+		LU632_RS19425	0.54	-0.7
3,677,957	+		LU632_RS19425	0.54	-2.3
3,677,997	+		LU632_RS19425	0.55	-0.4
3,678,016	+		LU632_RS19425	0.56	+1.2
3,678,016	+		LU632_RS19425	0.56	-1.3
3,678,020	-		LU632_RS19425	0.56	-0.3
3,678,036	+		LU632_RS19425	0.57	+1.4
3,678,037	-		LU632_RS19425	0.57	+1.7
3,678,118	+		LU632_RS19425	0.60	+1.7
3,678,118	+		LU632_RS19425	0.60	-0.5
3,678,119	-		LU632_RS19425	0.60	+1.7
3,678,119	-		LU632_RS19425	0.60	-0.3
3,678,119	-		LU632_RS19425	0.60	+2.1
3,678,142	+		LU632_RS19425	0.61	-0.1
3,678,149	-		LU632_RS19425	0.61	-0.6
3,678,149	-		LU632_RS19425	0.61	+2.0
3,678,149	-		LU632_RS19425	0.61	-0.4
3,678,209	+		LU632_RS19425	0.63	+0.5
3,678,347	-		LU632_RS19425	0.68	-0.7
3,678,442	+		LU632_RS19425	0.71	+0.7
3,678,461	+		LU632_RS19425	0.72	-0.1
3,678,461	+		LU632_RS19425	0.72	-0.3
3,678,462	-		LU632_RS19425	0.72	+0.7
3,678,496	+		LU632_RS19425	0.73	-2.3
3,678,496	+		LU632_RS19425	0.73	-0.1
3,678,496	+		LU632_RS19425	0.73	-1.6
3,678,496	+		LU632_RS19425	0.73	+1.0
3,678,496	+		LU632_RS19425	0.73	+0.7
3,678,497	-		LU632_RS19425	0.73	+0.2
3,678,517	+		LU632_RS19425	0.74	-0.0
3,678,598	+		LU632_RS19425	0.77	+0.8
3,678,809	-		LU632_RS19425	0.85	-0.1
3,680,047	-				+0.1
3,680,061	-				-1.8