Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19175

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,624,039	-	gntU	LU632_RS19170	0.57	+0.7
3,624,039	-	gntU	LU632_RS19170	0.57	+1.6
3,624,040	+	gntU	LU632_RS19170	0.57	+0.7
3,624,041	-	gntU	LU632_RS19170	0.57	-0.3
3,624,041	-	gntU	LU632_RS19170	0.57	+0.8
3,624,106	+	gntU	LU632_RS19170	0.62	+1.7
3,624,107	-	gntU	LU632_RS19170	0.62	-1.1
3,624,107	-	gntU	LU632_RS19170	0.62	+0.7
3,624,107	-	gntU	LU632_RS19170	0.62	+0.3
3,624,378	+	gntU	LU632_RS19170	0.82	-0.3
3,624,379	-	gntU	LU632_RS19170	0.83	+0.0
3,624,403	+	gntU	LU632_RS19170	0.84	-1.5
3,624,403	+	gntU	LU632_RS19170	0.84	-1.5
3,624,456	+	gntU	LU632_RS19170	0.88	-0.2
3,624,457	-	gntU	LU632_RS19170	0.88	+0.3
3,624,740	+				-1.9
3,624,740	+				-1.6
3,624,741	-				+0.7
3,624,741	-				+1.8
3,624,741	-				-0.3
3,624,741	-				-2.3
3,624,742	+				-3.7
3,624,743	-				-0.5
3,624,743	-				+0.0
3,624,743	-				-2.0
3,624,743	-				+0.9
3,624,749	+				+0.2
3,624,816	+				-1.3
3,624,816	+				-0.5
3,624,901	+				-0.7
3,624,940	+				+0.3
3,624,941	-				+0.3
3,624,942	+				-1.3
3,624,942	+				+1.4
3,624,954	-				+1.4
3,624,954	-				-1.5
3,624,960	+				+0.9
3,624,973	-				+1.2
3,625,762	+				+0.6
3,625,825	-				+2.1
3,625,872	+				+0.8
3,625,873	-				+0.5
3,625,904	+				-0.4
3,625,905	-				-1.6
3,625,914	+				+0.3
3,625,915	-				+0.2
3,625,917	-				-1.5
3,625,976	-				+2.7
3,625,976	-				+0.2
3,626,005	-				-1.0
3,626,160	+				+0.1
3,626,160	+				-1.2
3,626,165	-				-0.8
3,626,165	-				+0.8
3,626,402	+				+2.1
3,626,475	+				+0.5
3,626,476	-				+0.0
3,626,478	+				-2.0
3,626,479	-				+0.8
3,626,542	+				+0.1