Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt brnQ and LU632_RS18895 are separated by 90 nucleotides LU632_RS18895 and LU632_RS18900 are separated by 115 nucleotides
LU632_RS18890: brnQ - branched-chain amino acid transport system II carrier protein, at 3,563,742 to 3,565,040
brnQ
LU632_RS18895: LU632_RS18895 - hypothetical protein, at 3,565,131 to 3,565,316
_RS18895
LU632_RS18900: LU632_RS18900 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 3,565,432 to 3,566,517
_RS18900
Position (kb) 3565
3566 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3564.168 kb on - strand, within brnQ at 3564.168 kb on - strand, within brnQ at 3564.299 kb on + strand, within brnQ at 3564.299 kb on + strand, within brnQ at 3564.313 kb on + strand, within brnQ at 3564.407 kb on + strand, within brnQ at 3564.408 kb on - strand, within brnQ at 3564.408 kb on - strand, within brnQ at 3564.410 kb on + strand, within brnQ at 3564.410 kb on + strand, within brnQ at 3564.416 kb on + strand, within brnQ at 3564.416 kb on + strand, within brnQ at 3564.417 kb on - strand, within brnQ at 3564.417 kb on - strand, within brnQ at 3564.500 kb on - strand, within brnQ at 3564.571 kb on - strand, within brnQ at 3564.571 kb on - strand, within brnQ at 3564.667 kb on + strand, within brnQ at 3564.668 kb on - strand, within brnQ at 3564.672 kb on - strand, within brnQ at 3564.777 kb on + strand, within brnQ at 3564.939 kb on - strand at 3565.040 kb on + strand at 3565.092 kb on - strand at 3565.092 kb on - strand at 3565.092 kb on - strand at 3565.156 kb on - strand, within LU632_RS18895 at 3565.272 kb on + strand, within LU632_RS18895 at 3565.273 kb on - strand, within LU632_RS18895 at 3565.273 kb on - strand, within LU632_RS18895 at 3565.433 kb on + strand at 3565.433 kb on + strand at 3565.434 kb on - strand at 3565.562 kb on + strand, within LU632_RS18900 at 3565.582 kb on - strand, within LU632_RS18900 at 3565.669 kb on - strand, within LU632_RS18900 at 3565.837 kb on + strand, within LU632_RS18900 at 3565.862 kb on + strand, within LU632_RS18900 at 3565.879 kb on + strand, within LU632_RS18900 at 3565.879 kb on + strand, within LU632_RS18900 at 3565.880 kb on - strand, within LU632_RS18900 at 3565.982 kb on - strand, within LU632_RS18900 at 3566.156 kb on + strand, within LU632_RS18900 at 3566.168 kb on - strand, within LU632_RS18900 at 3566.238 kb on - strand, within LU632_RS18900 at 3566.264 kb on - strand, within LU632_RS18900
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 3,564,168 - brnQ LU632_RS18890 0.33 -1.1 3,564,168 - brnQ LU632_RS18890 0.33 -0.4 3,564,299 + brnQ LU632_RS18890 0.43 -1.9 3,564,299 + brnQ LU632_RS18890 0.43 -0.6 3,564,313 + brnQ LU632_RS18890 0.44 -0.4 3,564,407 + brnQ LU632_RS18890 0.51 +0.8 3,564,408 - brnQ LU632_RS18890 0.51 +0.3 3,564,408 - brnQ LU632_RS18890 0.51 -1.2 3,564,410 + brnQ LU632_RS18890 0.51 -0.4 3,564,410 + brnQ LU632_RS18890 0.51 +0.3 3,564,416 + brnQ LU632_RS18890 0.52 -1.1 3,564,416 + brnQ LU632_RS18890 0.52 -0.7 3,564,417 - brnQ LU632_RS18890 0.52 +0.1 3,564,417 - brnQ LU632_RS18890 0.52 -1.6 3,564,500 - brnQ LU632_RS18890 0.58 -1.2 3,564,571 - brnQ LU632_RS18890 0.64 -0.2 3,564,571 - brnQ LU632_RS18890 0.64 -1.1 3,564,667 + brnQ LU632_RS18890 0.71 +0.0 3,564,668 - brnQ LU632_RS18890 0.71 +0.4 3,564,672 - brnQ LU632_RS18890 0.72 -0.9 3,564,777 + brnQ LU632_RS18890 0.80 -1.1 3,564,939 - -0.7 3,565,040 + -0.7 3,565,092 - +0.9 3,565,092 - +0.5 3,565,092 - +0.5 3,565,156 - LU632_RS18895 0.13 +0.4 3,565,272 + LU632_RS18895 0.76 +1.3 3,565,273 - LU632_RS18895 0.76 +0.9 3,565,273 - LU632_RS18895 0.76 -1.7 3,565,433 + +0.4 3,565,433 + +0.8 3,565,434 - -1.5 3,565,562 + LU632_RS18900 0.12 -0.1 3,565,582 - LU632_RS18900 0.14 +0.8 3,565,669 - LU632_RS18900 0.22 -1.1 3,565,837 + LU632_RS18900 0.37 +0.4 3,565,862 + LU632_RS18900 0.40 +1.1 3,565,879 + LU632_RS18900 0.41 +1.1 3,565,879 + LU632_RS18900 0.41 -0.9 3,565,880 - LU632_RS18900 0.41 +0.2 3,565,982 - LU632_RS18900 0.51 +0.1 3,566,156 + LU632_RS18900 0.67 +3.2 3,566,168 - LU632_RS18900 0.68 -2.6 3,566,238 - LU632_RS18900 0.74 -0.6 3,566,264 - LU632_RS18900 0.77 +1.7
Or see this region's nucleotide sequence