Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18530

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,501,357	+				-0.4
3,501,357	+				-1.3
3,501,358	-				-1.7
3,501,394	+				-0.6
3,501,395	-				-0.5
3,501,395	-				-2.1
3,501,395	-				+2.8
3,501,402	+				+0.1
3,501,402	+				+0.1
3,501,402	+				-2.1
3,501,403	-				+0.3
3,501,502	+		LU632_RS18520	0.21	+1.2
3,501,604	+		LU632_RS18520	0.41	-1.4
3,501,605	-		LU632_RS18520	0.41	+0.8
3,501,671	+		LU632_RS18520	0.54	+0.5
3,501,710	-		LU632_RS18520	0.62	+1.8
3,501,766	+		LU632_RS18520	0.73	-0.3
3,501,767	-		LU632_RS18520	0.73	-1.6
3,501,767	-		LU632_RS18520	0.73	-1.4
3,501,868	+				+0.5
3,501,961	-				-2.3
3,501,964	+				+0.4
3,502,097	-		LU632_RS18525	0.79	+0.2
3,502,097	-		LU632_RS18525	0.79	-0.0
3,502,099	-		LU632_RS18525	0.80	-1.6
3,502,099	-		LU632_RS18525	0.80	-1.8
3,502,187	+				+1.1
3,502,202	+				+0.5
3,502,202	+				+0.2
3,502,272	-				-0.5
3,502,519	-		LU632_RS18530	0.32	-0.9
3,502,986	+				-0.1
3,503,415	-				+0.8
3,503,506	-				-0.1
3,503,526	+				+2.1
3,503,527	-				+1.5
3,503,527	-				-2.3
3,503,561	+				-1.0
3,503,656	-				+3.1
3,503,727	+				+0.8
3,503,728	-				+1.9
3,503,787	+		LU632_RS18535	0.12	+0.2
3,503,788	-		LU632_RS18535	0.12	+0.4
3,503,943	-		LU632_RS18535	0.19	-0.5
3,503,947	+		LU632_RS18535	0.19	-0.3