Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17915

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,378,804	-		LU632_RS17905	0.73	+1.9
3,378,804	-		LU632_RS17905	0.73	+0.7
3,378,825	+		LU632_RS17905	0.76	+1.7
3,378,825	+		LU632_RS17905	0.76	+0.5
3,378,825	+		LU632_RS17905	0.76	-0.8
3,378,825	+		LU632_RS17905	0.76	-0.2
3,378,825	+		LU632_RS17905	0.76	-0.6
3,378,825	+		LU632_RS17905	0.76	+0.1
3,378,827	+		LU632_RS17905	0.77	-0.1
3,378,828	-		LU632_RS17905	0.77	+0.2
3,378,840	+		LU632_RS17905	0.79	+0.2
3,378,884	+		LU632_RS17905	0.87	+0.4
3,378,953	-				+0.0
3,379,633	+				+1.7
3,379,738	+				+0.4
3,379,747	+				-0.3
3,379,764	+				+0.5
3,379,764	+				-0.3
3,379,764	+				+1.0
3,379,765	-				+0.2
3,379,765	-				+0.7
3,379,765	-				+1.1
3,379,765	-				+1.4
3,379,796	+				-0.4
3,381,086	-				-0.9
3,381,117	+				-4.5
3,381,192	+				+0.7
3,381,193	-				+1.3
3,381,193	-				+0.7
3,381,196	-				+0.9
3,381,214	-				-1.6
3,381,226	-				-1.1
3,381,328	-				+0.1
3,381,341	-				+0.9
3,381,343	+				+1.8
3,381,343	+				+0.7
3,381,366	-				-1.1
3,381,366	-				-0.8
3,381,378	+				+0.2
3,381,643	+	hmpA	LU632_RS17920	0.24	+2.2
3,381,826	+	hmpA	LU632_RS17920	0.39	-1.1
3,381,826	+	hmpA	LU632_RS17920	0.39	-0.3
3,381,826	+	hmpA	LU632_RS17920	0.39	-1.6
3,381,826	+	hmpA	LU632_RS17920	0.39	-0.5
3,381,827	-	hmpA	LU632_RS17920	0.40	+0.3
3,381,835	-	hmpA	LU632_RS17920	0.40	-0.3
3,381,871	-	hmpA	LU632_RS17920	0.43	-2.0
3,381,907	+	hmpA	LU632_RS17920	0.46	-0.3
3,381,922	+	hmpA	LU632_RS17920	0.48	+0.4
3,381,971	-	hmpA	LU632_RS17920	0.52	-0.0
3,381,996	+	hmpA	LU632_RS17920	0.54	-0.3