Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17565

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,297,230	-				+1.0
3,297,232	-				-1.2
3,298,060	+				-1.2
3,298,122	-				-1.3
3,298,134	-				+0.1
3,298,134	-				+0.1
3,298,217	+				-0.2
3,298,218	-				+0.3
3,298,223	-				-1.7
3,298,223	-				-3.8
3,298,270	-				-1.1
3,298,353	+				-0.0
3,298,360	-				-3.5
3,298,407	-		LU632_RS17565	0.10	-3.2
3,298,417	-		LU632_RS17565	0.11	-0.5
3,298,476	+		LU632_RS17565	0.14	+2.3
3,298,477	-		LU632_RS17565	0.14	-1.2
3,298,486	+		LU632_RS17565	0.14	-1.2
3,298,486	+		LU632_RS17565	0.14	+0.3
3,298,486	+		LU632_RS17565	0.14	+0.7
3,298,486	+		LU632_RS17565	0.14	-1.8
3,298,487	-		LU632_RS17565	0.15	+0.2
3,298,518	+		LU632_RS17565	0.16	-0.2
3,298,519	-		LU632_RS17565	0.16	+0.6
3,298,576	+		LU632_RS17565	0.19	-0.1
3,298,582	+		LU632_RS17565	0.20	-0.2
3,298,713	-		LU632_RS17565	0.27	+2.6
3,298,730	-		LU632_RS17565	0.28	-1.1
3,298,760	+		LU632_RS17565	0.30	+0.9
3,298,783	+		LU632_RS17565	0.31	-1.5
3,298,784	-		LU632_RS17565	0.31	-0.6
3,298,903	-		LU632_RS17565	0.38	-0.8
3,298,903	-		LU632_RS17565	0.38	+2.4
3,298,984	-		LU632_RS17565	0.42	-2.2
3,299,129	+		LU632_RS17565	0.50	+0.3
3,299,130	-		LU632_RS17565	0.50	-0.2
3,299,148	-		LU632_RS17565	0.51	-2.4
3,299,163	-		LU632_RS17565	0.52	+0.4
3,299,163	-		LU632_RS17565	0.52	-1.1
3,299,262	+		LU632_RS17565	0.57	-0.4
3,299,262	+		LU632_RS17565	0.57	-0.9
3,299,263	-		LU632_RS17565	0.57	-1.3
3,299,402	+		LU632_RS17565	0.65	-0.4
3,299,402	+		LU632_RS17565	0.65	-0.1
3,299,402	+		LU632_RS17565	0.65	+0.6
3,299,402	+		LU632_RS17565	0.65	+0.1
3,299,403	-		LU632_RS17565	0.65	+1.3
3,299,429	+		LU632_RS17565	0.67	-0.8
3,299,430	-		LU632_RS17565	0.67	+0.4
3,299,430	-		LU632_RS17565	0.67	-0.0
3,299,500	+		LU632_RS17565	0.71	-1.0
3,299,579	+		LU632_RS17565	0.75	-0.1
3,299,580	-		LU632_RS17565	0.75	-1.7
3,299,609	+		LU632_RS17565	0.77	-0.0
3,299,609	+		LU632_RS17565	0.77	-0.6
3,299,634	+		LU632_RS17565	0.78	+1.1
3,299,736	+		LU632_RS17565	0.84	-0.5
3,299,736	+		LU632_RS17565	0.84	-0.3
3,299,736	+		LU632_RS17565	0.84	+2.8
3,299,737	-		LU632_RS17565	0.84	-0.8
3,299,739	-		LU632_RS17565	0.84	+3.2
3,299,739	-		LU632_RS17565	0.84	+0.6
3,299,741	+		LU632_RS17565	0.84	+0.1
3,299,741	+		LU632_RS17565	0.84	+0.0
3,299,742	-		LU632_RS17565	0.84	-0.2
3,299,742	-		LU632_RS17565	0.84	-0.2
3,299,742	-		LU632_RS17565	0.84	+0.3
3,299,751	+		LU632_RS17565	0.84	+0.6
3,299,751	+		LU632_RS17565	0.84	-0.2
3,299,752	-		LU632_RS17565	0.84	-3.9
3,299,752	-		LU632_RS17565	0.84	-0.9
3,299,822	+		LU632_RS17565	0.88	-0.7
3,299,822	+		LU632_RS17565	0.88	+0.2
3,299,880	+				-2.4
3,299,881	-				+0.2
3,299,881	-				-1.2
3,299,881	-				-0.2
3,299,881	-				+0.6
3,299,881	-				+2.4
3,299,881	-				-1.4
3,299,899	-				-1.0
3,299,901	-				+0.4
3,299,930	+				+1.0
3,299,930	+				-0.5
3,299,930	+				-1.8
3,299,931	-				-0.7
3,299,951	-				-0.7
3,299,979	-				-1.4
3,299,988	+				-0.9
3,299,989	-				-1.1
3,300,000	-				+0.6
3,300,054	-				+0.1
3,300,072	+				+0.2
3,300,079	+				+1.4
3,300,103	+				+0.3
3,300,110	-				-0.1
3,300,119	-				-2.9
3,300,168	+		LU632_RS17570	0.11	+1.2
3,300,232	+		LU632_RS17570	0.17	+0.2
3,300,233	-		LU632_RS17570	0.17	+0.4
3,300,369	-		LU632_RS17570	0.30	+0.2
3,300,478	+		LU632_RS17570	0.40	-1.2
3,300,478	+		LU632_RS17570	0.40	+0.5
3,300,519	+		LU632_RS17570	0.43	+0.0
3,300,541	+		LU632_RS17570	0.45	-3.1
3,300,542	-		LU632_RS17570	0.45	-1.3
3,300,542	-		LU632_RS17570	0.45	+0.8
3,300,562	+		LU632_RS17570	0.47	-0.4
3,300,615	+		LU632_RS17570	0.52	+0.9
3,300,816	-		LU632_RS17570	0.71	-3.4
3,300,859	-		LU632_RS17570	0.74	-0.5
3,300,874	-		LU632_RS17570	0.76	-0.5
3,300,961	-		LU632_RS17570	0.84	-2.4