Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17460

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,285,080	+				+1.7
3,285,082	+				+0.5
3,285,099	+				+0.1
3,285,100	-				-1.1
3,285,917	+		LU632_RS17460	0.27	-0.7
3,285,918	-		LU632_RS17460	0.28	-1.9
3,285,919	+		LU632_RS17460	0.29	+0.2
3,285,920	-		LU632_RS17460	0.30	-1.5
3,285,920	-		LU632_RS17460	0.30	-0.5
3,285,926	-		LU632_RS17460	0.34	+0.1
3,285,949	+		LU632_RS17460	0.52	+0.2
3,286,019	-				-0.4
3,286,019	-				-0.4
3,286,045	-				-0.3
3,286,106	+				+1.1
3,286,106	+				-0.9
3,286,286	+	mepS	LU632_RS17465	0.29	+1.2
3,286,287	-	mepS	LU632_RS17465	0.29	-0.7
3,286,293	-	mepS	LU632_RS17465	0.30	-1.1
3,286,324	+	mepS	LU632_RS17465	0.35	-0.5
3,286,351	-	mepS	LU632_RS17465	0.40	-1.3
3,286,351	-	mepS	LU632_RS17465	0.40	-0.8
3,286,351	-	mepS	LU632_RS17465	0.40	-0.1
3,286,473	+	mepS	LU632_RS17465	0.61	-1.3
3,286,474	-	mepS	LU632_RS17465	0.61	-3.8
3,286,548	-	mepS	LU632_RS17465	0.74	-0.5
3,286,604	-	mepS	LU632_RS17465	0.84	-0.8
3,286,664	+				-0.7
3,286,664	+				-1.0
3,286,664	+				-0.6
3,286,665	-				-0.6
3,286,665	-				-0.9
3,286,666	+				-0.7
3,286,666	+				-0.7
3,286,666	+				-0.9
3,286,666	+				-0.9
3,286,666	+				+0.3
3,286,666	+				+0.4
3,286,666	+				-0.9
3,286,667	-				-0.8
3,286,667	-				-1.9
3,286,667	-				-0.8
3,286,667	-				-1.1
3,286,667	-				-0.8
3,286,667	-				-0.1
3,286,667	-				-0.4
3,286,667	-				-0.3
3,286,667	-				-1.2
3,286,667	-				-0.3
3,286,667	-				-1.6
3,286,667	-				-2.1
3,286,667	-				-1.3
3,286,667	-				-2.1
3,286,669	-				-1.3
3,286,669	-				-1.5
3,286,742	-				-0.1
3,286,764	+				-0.7