Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS17435 and LU632_RS17440 are separated by 153 nucleotides LU632_RS17440 and LU632_RS17445 are separated by 103 nucleotides LU632_RS17445 and LU632_RS17450 are separated by 8 nucleotides LU632_RS17450 and LU632_RS17455 are separated by 212 nucleotides LU632_RS17455 and LU632_RS17460 are separated by 54 nucleotides
LU632_RS17435: LU632_RS17435 - DUF2913 family protein, at 3,282,512 to 3,282,799
_RS17435
LU632_RS17440: LU632_RS17440 - phospholipase D family protein, at 3,282,953 to 3,283,426
_RS17440
LU632_RS17445: LU632_RS17445 - hypothetical protein, at 3,283,530 to 3,283,708
_RS17445
LU632_RS17450: LU632_RS17450 - IS91 family transposase, at 3,283,717 to 3,284,916
_RS17450
LU632_RS17455: LU632_RS17455 - IS1 family transposase, at 3,285,129 to 3,285,826
_RS17455
LU632_RS17460: LU632_RS17460 - cell wall-binding protein, at 3,285,881 to 3,286,012
_RS17460
Position (kb)
3283
3284
3285 Strain fitness (log2 ratio)
-1
0
1 at 3282.821 kb on - strand at 3282.825 kb on + strand at 3282.826 kb on - strand at 3282.950 kb on - strand at 3283.109 kb on - strand, within LU632_RS17440 at 3285.080 kb on + strand at 3285.082 kb on + strand at 3285.099 kb on + strand at 3285.100 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 3,282,821 - -0.7 3,282,825 + -0.7 3,282,826 - +0.5 3,282,950 - -0.7 3,283,109 - LU632_RS17440 0.33 +0.3 3,285,080 + +1.7 3,285,082 + +0.5 3,285,099 + +0.1 3,285,100 - -1.1
Or see this region's nucleotide sequence