Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17450

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS17435 and LU632_RS17440 are separated by 153 nucleotidesLU632_RS17440 and LU632_RS17445 are separated by 103 nucleotidesLU632_RS17445 and LU632_RS17450 are separated by 8 nucleotidesLU632_RS17450 and LU632_RS17455 are separated by 212 nucleotidesLU632_RS17455 and LU632_RS17460 are separated by 54 nucleotides LU632_RS17435: LU632_RS17435 - DUF2913 family protein, at 3,282,512 to 3,282,799 _RS17435 LU632_RS17440: LU632_RS17440 - phospholipase D family protein, at 3,282,953 to 3,283,426 _RS17440 LU632_RS17445: LU632_RS17445 - hypothetical protein, at 3,283,530 to 3,283,708 _RS17445 LU632_RS17450: LU632_RS17450 - IS91 family transposase, at 3,283,717 to 3,284,916 _RS17450 LU632_RS17455: LU632_RS17455 - IS1 family transposase, at 3,285,129 to 3,285,826 _RS17455 LU632_RS17460: LU632_RS17460 - cell wall-binding protein, at 3,285,881 to 3,286,012 _RS17460 Position (kb) 3283 3284 3285Strain fitness (log2 ratio) -1 0 1at 3282.821 kb on - strandat 3282.825 kb on + strandat 3282.826 kb on - strandat 3282.950 kb on - strandat 3283.109 kb on - strand, within LU632_RS17440at 3285.080 kb on + strandat 3285.082 kb on + strandat 3285.099 kb on + strandat 3285.100 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
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3,282,821 - -0.7
3,282,825 + -0.7
3,282,826 - +0.5
3,282,950 - -0.7
3,283,109 - LU632_RS17440 0.33 +0.3
3,285,080 + +1.7
3,285,082 + +0.5
3,285,099 + +0.1
3,285,100 - -1.1

Or see this region's nucleotide sequence