Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16825

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,168,450	+	proV	LU632_RS16820	0.24	-0.2
3,168,538	-	proV	LU632_RS16820	0.31	+2.1
3,168,564	-	proV	LU632_RS16820	0.33	-0.5
3,168,613	-	proV	LU632_RS16820	0.37	+1.0
3,168,613	-	proV	LU632_RS16820	0.37	-0.6
3,168,721	-	proV	LU632_RS16820	0.46	+0.1
3,168,721	-	proV	LU632_RS16820	0.46	+1.8
3,168,723	+	proV	LU632_RS16820	0.46	-0.5
3,168,723	+	proV	LU632_RS16820	0.46	-1.0
3,168,723	+	proV	LU632_RS16820	0.46	+0.2
3,168,723	+	proV	LU632_RS16820	0.46	-2.4
3,168,822	+	proV	LU632_RS16820	0.55	+0.1
3,168,823	-	proV	LU632_RS16820	0.55	-1.1
3,168,856	+	proV	LU632_RS16820	0.57	-0.0
3,168,871	-	proV	LU632_RS16820	0.59	-0.8
3,168,944	+	proV	LU632_RS16820	0.65	-1.4
3,168,949	-	proV	LU632_RS16820	0.65	-0.2
3,168,949	-	proV	LU632_RS16820	0.65	+0.2
3,168,952	+	proV	LU632_RS16820	0.65	+0.1
3,168,953	-	proV	LU632_RS16820	0.66	+0.7
3,168,953	-	proV	LU632_RS16820	0.66	+1.7
3,168,970	-	proV	LU632_RS16820	0.67	-2.8
3,168,973	+	proV	LU632_RS16820	0.67	+0.5
3,169,001	-	proV	LU632_RS16820	0.69	+0.2
3,169,034	-	proV	LU632_RS16820	0.72	-1.0
3,169,298	+				+1.4
3,169,299	-				-1.9
3,169,299	-				-0.0
3,169,299	-				-1.5
3,169,300	+				-0.2
3,169,301	-				-3.3
3,169,301	-				-0.3
3,169,315	+				+2.5
3,169,327	-				-0.0
3,169,330	-				-1.1
3,169,330	-				-1.7
3,169,330	-				-0.8
3,169,338	+				-0.8
3,169,610	+	proW	LU632_RS16825	0.22	-0.4
3,169,610	+	proW	LU632_RS16825	0.22	+0.5
3,169,614	-	proW	LU632_RS16825	0.22	-0.8
3,169,631	+	proW	LU632_RS16825	0.23	+0.1
3,169,731	+	proW	LU632_RS16825	0.32	+0.5
3,169,731	+	proW	LU632_RS16825	0.32	+0.5
3,169,731	+	proW	LU632_RS16825	0.32	+0.7
3,169,731	+	proW	LU632_RS16825	0.32	+0.6
3,169,732	-	proW	LU632_RS16825	0.32	+1.4
3,169,732	-	proW	LU632_RS16825	0.32	-0.3
3,169,804	+	proW	LU632_RS16825	0.38	-1.3
3,169,991	+	proW	LU632_RS16825	0.54	-0.9
3,169,991	+	proW	LU632_RS16825	0.54	-1.3
3,169,991	+	proW	LU632_RS16825	0.54	+0.6
3,169,991	+	proW	LU632_RS16825	0.54	-0.1
3,169,991	+	proW	LU632_RS16825	0.54	+0.8
3,169,992	-	proW	LU632_RS16825	0.54	-0.7
3,169,992	-	proW	LU632_RS16825	0.54	-0.1
3,170,096	-	proW	LU632_RS16825	0.63	-0.0
3,170,102	+	proW	LU632_RS16825	0.64	-2.3
3,170,103	-	proW	LU632_RS16825	0.64	-0.9
3,170,103	-	proW	LU632_RS16825	0.64	-0.8
3,170,122	+	proW	LU632_RS16825	0.66	+0.7
3,170,122	+	proW	LU632_RS16825	0.66	+0.6
3,170,126	-	proW	LU632_RS16825	0.66	-0.9
3,170,126	-	proW	LU632_RS16825	0.66	+0.7
3,170,144	+	proW	LU632_RS16825	0.67	-1.4
3,170,148	-	proW	LU632_RS16825	0.68	-0.5
3,170,261	+	proW	LU632_RS16825	0.77	+0.1
3,170,399	+	proW	LU632_RS16825	0.89	+1.3
3,170,517	-				-0.5
3,170,527	-				-0.8
3,170,527	-				-0.5
3,170,597	+				+1.2
3,170,598	-				+0.3
3,170,644	-				+1.5
3,170,703	-	proX	LU632_RS16830	0.11	-0.5
3,170,790	+	proX	LU632_RS16830	0.20	-0.2
3,170,791	-	proX	LU632_RS16830	0.20	-0.9
3,170,791	-	proX	LU632_RS16830	0.20	+1.3
3,170,803	-	proX	LU632_RS16830	0.21	-0.6
3,170,871	+	proX	LU632_RS16830	0.28	+0.8
3,170,871	+	proX	LU632_RS16830	0.28	+0.5
3,170,871	+	proX	LU632_RS16830	0.28	-2.0
3,170,872	-	proX	LU632_RS16830	0.28	+2.3
3,170,872	-	proX	LU632_RS16830	0.28	+1.5
3,170,874	-	proX	LU632_RS16830	0.28	-2.1
3,170,912	+	proX	LU632_RS16830	0.32	-0.7
3,170,916	+	proX	LU632_RS16830	0.33	-1.0
3,170,916	+	proX	LU632_RS16830	0.33	-0.7
3,170,916	+	proX	LU632_RS16830	0.33	+0.5
3,170,916	+	proX	LU632_RS16830	0.33	-0.7
3,170,917	-	proX	LU632_RS16830	0.33	-0.8
3,170,951	+	proX	LU632_RS16830	0.36	-2.5
3,170,951	+	proX	LU632_RS16830	0.36	-1.2
3,171,062	+	proX	LU632_RS16830	0.47	+1.3
3,171,112	-	proX	LU632_RS16830	0.52	+2.4
3,171,151	-	proX	LU632_RS16830	0.56	-2.5
3,171,151	-	proX	LU632_RS16830	0.56	-1.9
3,171,151	-	proX	LU632_RS16830	0.56	+0.1
3,171,195	-	proX	LU632_RS16830	0.61	-1.8
3,171,195	-	proX	LU632_RS16830	0.61	+0.9
3,171,208	-	proX	LU632_RS16830	0.62	-0.2
3,171,212	+	proX	LU632_RS16830	0.62	+0.6
3,171,212	+	proX	LU632_RS16830	0.62	+0.2
3,171,212	+	proX	LU632_RS16830	0.62	+1.1
3,171,212	-	proX	LU632_RS16830	0.62	+0.8
3,171,213	-	proX	LU632_RS16830	0.62	-1.6
3,171,213	-	proX	LU632_RS16830	0.62	+0.2
3,171,213	-	proX	LU632_RS16830	0.62	-0.0
3,171,225	+	proX	LU632_RS16830	0.64	-0.0
3,171,290	+	proX	LU632_RS16830	0.70	-0.6
3,171,342	+	proX	LU632_RS16830	0.75	-0.0
3,171,359	+	proX	LU632_RS16830	0.77	-0.2
3,171,359	+	proX	LU632_RS16830	0.77	-0.8
3,171,368	+	proX	LU632_RS16830	0.78	-0.5
3,171,369	-	proX	LU632_RS16830	0.78	-0.2
3,171,500	+				+0.5
3,171,501	-				-0.4
3,171,501	-				+0.4
3,171,501	-				-0.0
3,171,501	-				+1.1
3,171,501	-				+1.0