Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16490

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,120,761	-	arnA	LU632_RS16485	0.50	-0.8
3,120,785	+	arnA	LU632_RS16485	0.52	-0.7
3,120,786	-	arnA	LU632_RS16485	0.52	+0.9
3,120,886	+	arnA	LU632_RS16485	0.57	+1.3
3,120,886	+	arnA	LU632_RS16485	0.57	-0.4
3,120,886	+	arnA	LU632_RS16485	0.57	+0.6
3,120,886	+	arnA	LU632_RS16485	0.57	-0.6
3,120,886	+	arnA	LU632_RS16485	0.57	+1.6
3,120,887	-	arnA	LU632_RS16485	0.57	-3.5
3,120,887	-	arnA	LU632_RS16485	0.57	-1.6
3,120,888	+	arnA	LU632_RS16485	0.57	-2.0
3,120,889	-	arnA	LU632_RS16485	0.57	-0.3
3,120,889	-	arnA	LU632_RS16485	0.57	-1.7
3,121,044	+	arnA	LU632_RS16485	0.65	+1.1
3,121,256	-	arnA	LU632_RS16485	0.75	+0.4
3,121,417	+	arnA	LU632_RS16485	0.83	-2.2
3,121,418	-	arnA	LU632_RS16485	0.84	-1.4
3,121,466	-	arnA	LU632_RS16485	0.86	+1.6
3,121,466	-	arnA	LU632_RS16485	0.86	+0.3
3,121,497	+	arnA	LU632_RS16485	0.87	-0.0
3,121,497	+	arnA	LU632_RS16485	0.87	-0.4
3,121,675	-				+1.0
3,121,745	+				-2.3
3,121,827	+				+0.1
3,121,829	+				-0.4
3,121,829	+				-1.1
3,121,829	+				-0.7
3,121,829	+				-1.6
3,121,830	-				-0.7
3,121,830	-				+0.9
3,121,830	-				-0.6
3,121,830	-				-1.5
3,121,830	-				-0.5
3,121,833	+				-0.7
3,121,833	+				-2.6
3,121,833	+				-2.8
3,121,834	-				-1.2
3,121,844	+	arnC	LU632_RS16490	0.10	+0.9
3,121,844	+	arnC	LU632_RS16490	0.10	+1.3
3,121,845	-	arnC	LU632_RS16490	0.10	-1.4
3,121,845	-	arnC	LU632_RS16490	0.10	-0.7
3,121,845	-	arnC	LU632_RS16490	0.10	+0.8
3,122,017	-	arnC	LU632_RS16490	0.28	-0.9
3,122,017	-	arnC	LU632_RS16490	0.28	-1.0
3,122,017	-	arnC	LU632_RS16490	0.28	-1.1
3,122,022	+	arnC	LU632_RS16490	0.28	+0.4
3,122,022	+	arnC	LU632_RS16490	0.28	+0.4
3,122,022	+	arnC	LU632_RS16490	0.28	-1.2
3,122,023	-	arnC	LU632_RS16490	0.28	-0.1
3,122,023	-	arnC	LU632_RS16490	0.28	-0.1
3,122,034	+	arnC	LU632_RS16490	0.30	-1.7
3,122,038	-	arnC	LU632_RS16490	0.30	-0.6
3,122,060	+	arnC	LU632_RS16490	0.32	-1.7
3,122,061	-	arnC	LU632_RS16490	0.32	-1.6
3,122,070	+	arnC	LU632_RS16490	0.33	-3.6
3,122,070	+	arnC	LU632_RS16490	0.33	-1.6
3,122,158	-	arnC	LU632_RS16490	0.42	-2.7
3,122,181	+	arnC	LU632_RS16490	0.45	-1.9
3,122,182	-	arnC	LU632_RS16490	0.45	-1.7
3,122,185	-	arnC	LU632_RS16490	0.45	-1.9
3,122,185	-	arnC	LU632_RS16490	0.45	+0.8
3,122,185	-	arnC	LU632_RS16490	0.45	-1.0
3,122,217	+	arnC	LU632_RS16490	0.48	-1.7
3,122,241	+	arnC	LU632_RS16490	0.51	-1.3
3,122,241	+	arnC	LU632_RS16490	0.51	-0.3
3,122,241	+	arnC	LU632_RS16490	0.51	-1.7
3,122,241	+	arnC	LU632_RS16490	0.51	-0.9
3,122,242	-	arnC	LU632_RS16490	0.51	-1.0
3,122,242	-	arnC	LU632_RS16490	0.51	-2.6
3,122,242	-	arnC	LU632_RS16490	0.51	-2.2
3,122,242	-	arnC	LU632_RS16490	0.51	-1.1
3,122,293	+	arnC	LU632_RS16490	0.56	-2.3
3,122,294	-	arnC	LU632_RS16490	0.56	+0.1
3,122,356	+	arnC	LU632_RS16490	0.62	+1.6
3,122,356	+	arnC	LU632_RS16490	0.62	-3.5
3,122,472	+	arnC	LU632_RS16490	0.74	-1.3
3,122,472	+	arnC	LU632_RS16490	0.74	-1.9
3,122,493	-	arnC	LU632_RS16490	0.76	-2.1
3,122,568	+	arnC	LU632_RS16490	0.84	-0.5
3,122,617	+	arnC	LU632_RS16490	0.89	-2.2
3,122,618	-	arnC	LU632_RS16490	0.89	-1.2
3,122,706	+				+0.6
3,122,812	+				-1.4
3,122,871	+	arnB	LU632_RS16495	0.14	-2.9
3,122,871	+	arnB	LU632_RS16495	0.14	-2.6
3,122,872	-	arnB	LU632_RS16495	0.14	+1.6
3,123,098	-	arnB	LU632_RS16495	0.33	-1.6
3,123,098	-	arnB	LU632_RS16495	0.33	-0.7
3,123,122	+	arnB	LU632_RS16495	0.35	-3.0
3,123,142	+	arnB	LU632_RS16495	0.37	-0.6
3,123,142	+	arnB	LU632_RS16495	0.37	-2.2
3,123,142	+	arnB	LU632_RS16495	0.37	-2.6
3,123,143	-	arnB	LU632_RS16495	0.37	+0.5
3,123,143	-	arnB	LU632_RS16495	0.37	-0.6
3,123,160	-	arnB	LU632_RS16495	0.39	-1.5
3,123,163	+	arnB	LU632_RS16495	0.39	-1.5
3,123,163	+	arnB	LU632_RS16495	0.39	+0.5
3,123,163	+	arnB	LU632_RS16495	0.39	-0.0
3,123,164	-	arnB	LU632_RS16495	0.39	-0.4
3,123,179	-	arnB	LU632_RS16495	0.40	-2.2
3,123,179	-	arnB	LU632_RS16495	0.40	-0.7
3,123,341	+	arnB	LU632_RS16495	0.54	-0.0
3,123,379	-	arnB	LU632_RS16495	0.58	-1.7
3,123,379	-	arnB	LU632_RS16495	0.58	+0.1
3,123,477	+	arnB	LU632_RS16495	0.66	-1.2
3,123,477	+	arnB	LU632_RS16495	0.66	+0.6
3,123,478	-	arnB	LU632_RS16495	0.66	+3.9
3,123,478	-	arnB	LU632_RS16495	0.66	+1.7
3,123,482	+	arnB	LU632_RS16495	0.67	-1.6
3,123,482	+	arnB	LU632_RS16495	0.67	-3.1
3,123,483	-	arnB	LU632_RS16495	0.67	-0.6
3,123,550	+	arnB	LU632_RS16495	0.73	-0.2
3,123,551	-	arnB	LU632_RS16495	0.73	-1.0