Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16435

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
3,109,561	-				-0.4
3,109,568	+				+2.1
3,109,569	-				+0.0
3,109,586	+		LU632_RS16425	0.10	+1.6
3,109,609	-		LU632_RS16425	0.15	+0.2
3,109,685	+		LU632_RS16425	0.33	+0.8
3,109,691	-		LU632_RS16425	0.34	-0.9
3,109,743	-		LU632_RS16425	0.47	-0.3
3,109,774	+		LU632_RS16425	0.54	-0.0
3,109,786	-		LU632_RS16425	0.57	+0.4
3,109,937	+				-0.6
3,109,938	-				-1.0
3,110,022	+				+0.2
3,110,023	-				-0.2
3,110,039	-				+0.4
3,110,101	-				+0.2
3,110,898	+				-0.2
3,110,926	-				+0.5
3,110,942	-				-0.1
3,110,942	-				+0.0
3,110,959	+				+0.2
3,110,991	-				+0.0
3,110,994	+				-0.6
3,111,436	-				-0.0
3,111,455	+				+0.9
3,111,487	+				-0.3
3,111,532	+				-2.1
3,111,609	-	pagP	LU632_RS16445	0.21	-1.4
3,111,616	+	pagP	LU632_RS16445	0.23	-1.0
3,111,616	+	pagP	LU632_RS16445	0.23	-1.2
3,111,617	-	pagP	LU632_RS16445	0.23	-0.6
3,111,617	-	pagP	LU632_RS16445	0.23	-0.3
3,111,720	-	pagP	LU632_RS16445	0.41	+2.7
3,111,734	+	pagP	LU632_RS16445	0.43	-1.0
3,111,735	-	pagP	LU632_RS16445	0.43	-1.0
3,111,764	-	pagP	LU632_RS16445	0.48	+0.2