Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14920

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
2,836,209	-		LU632_RS14910	0.26	+0.2
2,836,295	-		LU632_RS14910	0.39	-0.2
2,836,361	+		LU632_RS14910	0.50	-0.3
2,836,366	-		LU632_RS14910	0.50	+0.7
2,836,368	-		LU632_RS14910	0.51	+0.6
2,836,393	+		LU632_RS14910	0.55	+0.6
2,836,394	-		LU632_RS14910	0.55	+0.2
2,836,414	-		LU632_RS14910	0.58	+1.1
2,836,420	-		LU632_RS14910	0.59	+0.5
2,836,429	+		LU632_RS14910	0.60	+0.5
2,836,429	+		LU632_RS14910	0.60	-0.2
2,836,429	+		LU632_RS14910	0.60	+0.1
2,836,429	+		LU632_RS14910	0.60	-1.1
2,836,430	-		LU632_RS14910	0.60	+0.8
2,836,430	-		LU632_RS14910	0.60	-0.3
2,836,430	-		LU632_RS14910	0.60	-0.2
2,836,430	-		LU632_RS14910	0.60	+0.8
2,836,608	+		LU632_RS14910	0.88	-1.3
2,836,608	+		LU632_RS14910	0.88	+0.5
2,836,629	+				+0.3
2,836,629	+				+0.1
2,836,630	-				+0.3
2,836,662	+				+0.3
2,836,772	+				+0.7
2,836,772	+				-0.5
2,836,773	-				+0.5
2,836,773	-				-0.0
2,836,958	-		LU632_RS14915	0.65	+1.0
2,836,958	-		LU632_RS14915	0.65	-0.5
2,837,185	-				+2.1
2,837,186	+				+0.2
2,837,218	-				-1.1
2,837,218	-				+0.9
2,837,222	+				+1.1
2,837,222	+				-0.0
2,837,276	-		LU632_RS14920	0.14	+1.3
2,837,298	-		LU632_RS14920	0.16	-1.3
2,837,352	+		LU632_RS14920	0.22	+0.3
2,837,386	-		LU632_RS14920	0.26	+0.2
2,837,429	+		LU632_RS14920	0.31	-0.4
2,837,429	+		LU632_RS14920	0.31	+0.5
2,837,430	-		LU632_RS14920	0.31	-2.5
2,837,431	+		LU632_RS14920	0.31	+0.3
2,837,432	-		LU632_RS14920	0.31	+0.1
2,837,432	-		LU632_RS14920	0.31	-1.1
2,837,467	-		LU632_RS14920	0.35	-2.0
2,837,488	-		LU632_RS14920	0.38	-0.4
2,837,539	+		LU632_RS14920	0.43	+0.5
2,837,539	+		LU632_RS14920	0.43	-0.4
2,837,539	+		LU632_RS14920	0.43	+0.2
2,837,540	-		LU632_RS14920	0.44	+0.9
2,837,540	-		LU632_RS14920	0.44	+1.1
2,837,540	-		LU632_RS14920	0.44	+0.7
2,837,562	+		LU632_RS14920	0.46	-0.4
2,837,563	-		LU632_RS14920	0.46	-1.1
2,837,663	+		LU632_RS14920	0.58	-0.2
2,837,663	+		LU632_RS14920	0.58	+2.1
2,837,663	+		LU632_RS14920	0.58	-0.1
2,837,663	+		LU632_RS14920	0.58	+0.6
2,837,664	-		LU632_RS14920	0.58	+0.1
2,837,704	+		LU632_RS14920	0.62	+0.4
2,837,775	+		LU632_RS14920	0.70	-1.0
2,837,775	+		LU632_RS14920	0.70	-1.6
2,837,776	-		LU632_RS14920	0.70	+0.6
2,837,776	-		LU632_RS14920	0.70	-0.3
2,837,824	+		LU632_RS14920	0.76	-0.5
2,837,824	+		LU632_RS14920	0.76	-0.8
2,837,825	-		LU632_RS14920	0.76	-0.2
2,837,825	-		LU632_RS14920	0.76	+1.2
2,837,852	+		LU632_RS14920	0.79	+0.3
2,837,909	+		LU632_RS14920	0.86	-1.8
2,838,016	-				-0.7
2,838,027	+				-0.1
2,838,028	-				+0.2
2,838,160	+				+0.6
2,838,160	+				+0.8
2,838,161	-				+1.2
2,838,163	+				+1.5
2,838,163	+				-1.0
2,838,165	+				+1.1
2,838,190	+		LU632_RS14925	0.11	-1.4
2,838,191	-		LU632_RS14925	0.11	+0.0
2,838,302	-		LU632_RS14925	0.19	+1.2
2,838,447	-		LU632_RS14925	0.29	-1.1
2,838,454	+		LU632_RS14925	0.29	+0.9
2,838,457	-		LU632_RS14925	0.29	+2.2
2,838,457	-		LU632_RS14925	0.29	-1.6
2,838,505	-		LU632_RS14925	0.33	-0.3
2,838,505	-		LU632_RS14925	0.33	-0.6
2,838,556	+		LU632_RS14925	0.36	+0.3
2,838,565	-		LU632_RS14925	0.37	-1.3
2,838,565	-		LU632_RS14925	0.37	-0.8
2,838,662	+		LU632_RS14925	0.43	-0.2
2,838,662	+		LU632_RS14925	0.43	+1.1
2,838,663	-		LU632_RS14925	0.44	+0.5
2,838,773	+		LU632_RS14925	0.51	-0.6
2,838,773	+		LU632_RS14925	0.51	+1.3
2,838,774	-		LU632_RS14925	0.51	-0.2
2,838,774	-		LU632_RS14925	0.51	+1.4
2,838,775	+		LU632_RS14925	0.51	+0.4
2,838,808	-		LU632_RS14925	0.54	+0.2
2,838,808	-		LU632_RS14925	0.54	-0.1
2,838,808	-		LU632_RS14925	0.54	-0.5
2,838,811	+		LU632_RS14925	0.54	+1.2
2,838,880	+		LU632_RS14925	0.59	-0.7
2,838,880	+		LU632_RS14925	0.59	+0.3
2,838,968	-		LU632_RS14925	0.65	+0.8
2,838,969	+		LU632_RS14925	0.65	+0.5
2,838,969	+		LU632_RS14925	0.65	+0.0
2,838,969	+		LU632_RS14925	0.65	+0.4
2,838,970	-		LU632_RS14925	0.65	+1.0
2,838,970	-		LU632_RS14925	0.65	-2.0
2,838,976	+		LU632_RS14925	0.65	+0.1
2,838,977	-		LU632_RS14925	0.65	-0.8
2,838,979	+		LU632_RS14925	0.65	-2.2