Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS14880

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
2,828,937	+	cbl	LU632_RS14875	0.68	+0.5
2,829,039	+	cbl	LU632_RS14875	0.79	+0.6
2,829,039	+	cbl	LU632_RS14875	0.79	-0.3
2,829,159	+				-0.6
2,829,159	+				-0.5
2,829,183	+				+0.1
2,829,223	-				-3.3
2,829,281	+				-0.4
2,829,415	-				+1.0
2,829,422	-				+0.3
2,829,462	+				-1.5
2,829,792	+				+0.9
2,829,793	-				+0.9
2,829,839	+				-0.2
2,829,868	-				-2.4
2,829,899	-				+0.6
2,830,062	-		LU632_RS14880	0.14	+0.9
2,830,110	-		LU632_RS14880	0.18	+1.1
2,830,112	+		LU632_RS14880	0.18	+0.8
2,830,113	-		LU632_RS14880	0.18	+1.7
2,830,113	-		LU632_RS14880	0.18	-1.4
2,830,422	+		LU632_RS14880	0.46	-0.1
2,830,422	+		LU632_RS14880	0.46	+0.6
2,830,424	+		LU632_RS14880	0.46	+0.8
2,830,424	+		LU632_RS14880	0.46	+0.4
2,830,540	+		LU632_RS14880	0.56	+0.7
2,830,942	+				+0.7
2,830,954	+				+1.2
2,830,954	+				+0.9
2,830,955	-				+0.1
2,830,955	-				-1.0
2,830,989	+				-0.6
2,830,990	-				-1.6
2,831,002	+				-0.5
2,831,002	+				+0.6
2,831,003	-				-1.5
2,831,050	-				+0.7
2,831,090	-				-0.5
2,831,131	-				-0.2
2,831,131	-				-1.1
2,831,175	+				+1.5
2,831,250	+				-1.8
2,831,251	-				+0.4
2,831,286	+				+1.2
2,831,287	-				+0.6
2,831,375	-				-2.2
2,831,376	+				+0.2
2,831,376	+				-0.8
2,831,376	+				+0.0
2,831,376	+				-1.3
2,831,376	+				-0.7
2,831,376	+				-0.6
2,831,376	+				+0.6
2,831,377	-				-3.9
2,831,377	-				+1.5
2,831,377	-				-1.7
2,831,434	+				-1.7
2,831,479	+				-1.2
2,831,496	-				+1.4
2,831,572	-		LU632_RS14885	0.13	-0.5
2,831,580	+		LU632_RS14885	0.14	+0.7
2,831,580	+		LU632_RS14885	0.14	-2.9
2,831,580	+		LU632_RS14885	0.14	+0.5
2,831,580	+		LU632_RS14885	0.14	+2.8
2,831,580	+		LU632_RS14885	0.14	+1.8
2,831,623	+		LU632_RS14885	0.17	+0.4
2,831,624	-		LU632_RS14885	0.17	-2.7
2,831,624	-		LU632_RS14885	0.17	-0.9
2,831,684	+		LU632_RS14885	0.21	-0.2
2,831,707	-		LU632_RS14885	0.23	-0.6
2,831,749	+		LU632_RS14885	0.25	+0.5
2,831,749	+		LU632_RS14885	0.25	-1.5
2,831,789	+		LU632_RS14885	0.28	-0.1
2,831,974	+		LU632_RS14885	0.41	+1.0
2,831,975	-		LU632_RS14885	0.41	-0.8
2,831,992	+		LU632_RS14885	0.42	-1.1
2,831,993	-		LU632_RS14885	0.42	-0.3
2,832,002	-		LU632_RS14885	0.43	-1.3