Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12380

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
2,352,314	-		LU632_RS12370	0.26	-0.8
2,352,369	+		LU632_RS12370	0.40	-0.1
2,352,369	+		LU632_RS12370	0.40	-1.0
2,352,429	+		LU632_RS12370	0.54	-1.0
2,352,508	-		LU632_RS12370	0.74	-0.2
2,352,508	-		LU632_RS12370	0.74	+0.7
2,352,535	-		LU632_RS12370	0.80	-1.6
2,352,680	-				-1.3
2,353,114	+				+0.6
2,353,115	-				-0.2
2,353,178	-				-0.0
2,353,248	+				-0.9
2,353,248	+				-0.5
2,353,248	+				-0.6
2,353,249	-				-0.3
2,353,252	+				+0.1
2,353,252	+				-2.0
2,353,252	+				+0.0
2,353,253	-				-0.7
2,353,308	-				-1.0
2,353,354	+				+1.1
2,353,354	+				-1.0
2,353,450	+		LU632_RS12380	0.18	+0.6
2,353,476	+		LU632_RS12380	0.20	+0.4
2,353,476	+		LU632_RS12380	0.20	-1.2
2,353,476	+		LU632_RS12380	0.20	+0.0
2,353,514	-		LU632_RS12380	0.24	-0.0
2,353,544	+		LU632_RS12380	0.28	-0.8
2,353,544	+		LU632_RS12380	0.28	+0.7
2,353,594	+		LU632_RS12380	0.33	-1.9
2,353,594	+		LU632_RS12380	0.33	+0.1
2,353,595	-		LU632_RS12380	0.33	+1.6
2,353,595	-		LU632_RS12380	0.33	+0.8
2,353,665	+		LU632_RS12380	0.40	+0.1
2,353,665	+		LU632_RS12380	0.40	-0.2
2,353,787	-		LU632_RS12380	0.53	+0.3
2,353,883	-		LU632_RS12380	0.63	+0.9
2,353,950	-		LU632_RS12380	0.70	+0.5
2,354,063	+		LU632_RS12380	0.82	-2.4
2,354,064	-		LU632_RS12380	0.82	+0.4
2,354,064	-		LU632_RS12380	0.82	-1.0
2,354,160	-				-1.3
2,354,216	+				-1.0
2,354,262	+				+0.2
2,354,279	+				+0.0
2,354,291	+				+1.7
2,354,291	+				-0.3
2,354,291	+				-1.5
2,354,361	+				+0.6
2,354,471	+				-1.9
2,354,472	-				-1.5
2,354,564	+				+0.2
2,354,577	+				-0.9
2,354,577	+				-0.6
2,354,581	+				-0.3
2,354,640	-				-0.3
2,354,709	-		LU632_RS12385	0.10	-0.7
2,354,777	-		LU632_RS12385	0.27	+1.5
2,354,777	-		LU632_RS12385	0.27	+0.5
2,354,806	+		LU632_RS12385	0.34	-2.6
2,354,808	+		LU632_RS12385	0.34	-0.5
2,354,883	-		LU632_RS12385	0.52	+0.4
2,355,099	+				-0.4