Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12295

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
2,335,007	+		LU632_RS12285	0.62	-0.6
2,335,008	-		LU632_RS12285	0.62	+0.1
2,335,010	+		LU632_RS12285	0.63	-0.3
2,335,011	-		LU632_RS12285	0.63	-0.3
2,335,059	+		LU632_RS12285	0.68	+1.1
2,335,060	-		LU632_RS12285	0.69	+0.1
2,335,060	-		LU632_RS12285	0.69	+0.3
2,335,060	-		LU632_RS12285	0.69	-0.7
2,335,061	+		LU632_RS12285	0.69	-0.7
2,335,062	-		LU632_RS12285	0.69	-1.7
2,335,131	+		LU632_RS12285	0.77	-1.5
2,335,132	-		LU632_RS12285	0.77	-1.7
2,335,139	-		LU632_RS12285	0.78	+1.3
2,335,148	-		LU632_RS12285	0.79	+1.5
2,335,256	+				-2.5
2,335,257	-				-0.4
2,335,312	+				+0.3
2,335,317	+				-0.6
2,335,334	+				+0.9
2,335,366	-				+0.1
2,335,466	+	osmW	LU632_RS12290	0.13	+0.7
2,335,466	+	osmW	LU632_RS12290	0.13	-2.6
2,335,467	-	osmW	LU632_RS12290	0.13	-0.6
2,335,505	+	osmW	LU632_RS12290	0.19	+2.5
2,335,505	+	osmW	LU632_RS12290	0.19	+0.3
2,335,506	-	osmW	LU632_RS12290	0.19	-1.2
2,335,507	+	osmW	LU632_RS12290	0.20	-0.6
2,335,507	+	osmW	LU632_RS12290	0.20	+1.6
2,335,507	+	osmW	LU632_RS12290	0.20	-2.9
2,335,508	-	osmW	LU632_RS12290	0.20	-0.6
2,335,508	-	osmW	LU632_RS12290	0.20	-2.8
2,335,508	-	osmW	LU632_RS12290	0.20	-1.5
2,335,508	-	osmW	LU632_RS12290	0.20	-0.7
2,335,508	-	osmW	LU632_RS12290	0.20	-2.1
2,335,612	-	osmW	LU632_RS12290	0.38	+0.4
2,335,813	+	osmW	LU632_RS12290	0.72	+0.0
2,335,915	+	osmW	LU632_RS12290	0.89	-2.7
2,335,916	-	osmW	LU632_RS12290	0.90	+1.7
2,335,971	-				-1.5
2,335,974	+				+3.3
2,335,975	-				-0.7
2,335,980	+				+0.1
2,336,031	+				+0.7
2,336,031	+				-0.1
2,336,082	+				-1.0
2,336,141	-		LU632_RS12295	0.14	-1.5
2,336,257	+		LU632_RS12295	0.25	-2.1
2,336,325	+		LU632_RS12295	0.31	-0.4
2,336,325	+		LU632_RS12295	0.31	+1.0
2,336,325	+		LU632_RS12295	0.31	+0.0
2,336,325	+		LU632_RS12295	0.31	+2.1
2,336,325	+		LU632_RS12295	0.31	+1.1
2,336,326	-		LU632_RS12295	0.31	+0.3
2,336,326	-		LU632_RS12295	0.31	+0.1
2,336,326	-		LU632_RS12295	0.31	+2.8
2,336,326	-		LU632_RS12295	0.31	-0.1
2,336,326	-		LU632_RS12295	0.31	+1.1
2,336,326	-		LU632_RS12295	0.31	+0.4
2,336,530	+		LU632_RS12295	0.49	-0.5
2,336,634	+		LU632_RS12295	0.58	-1.0
2,336,710	+		LU632_RS12295	0.64	-2.4
2,336,710	+		LU632_RS12295	0.64	-0.8
2,336,728	-		LU632_RS12295	0.66	-0.8
2,336,764	+		LU632_RS12295	0.69	-0.1
2,336,828	-		LU632_RS12295	0.75	+0.1
2,336,920	+		LU632_RS12295	0.83	-0.5
2,336,922	+		LU632_RS12295	0.83	-2.0
2,336,923	-		LU632_RS12295	0.83	+0.1
2,336,923	-		LU632_RS12295	0.83	-0.9
2,336,929	+		LU632_RS12295	0.84	+0.4
2,337,059	+				-2.0
2,337,059	+				-1.1
2,337,059	+				-0.1
2,337,059	+				-2.0
2,337,059	+				+1.6
2,337,059	+				-0.0
2,337,061	+				-1.1
2,337,062	-				+1.5
2,337,062	-				+0.8
2,337,062	-				-0.8
2,337,071	+				-0.8
2,337,072	-				+0.4
2,337,113	+				-1.8
2,337,114	-				+0.1
2,337,160	+				+0.4
2,337,194	+				-0.3
2,337,227	-				+0.1
2,337,267	+	bioD	LU632_RS12300	0.15	+0.9
2,337,282	+	bioD	LU632_RS12300	0.18	-0.3
2,337,297	+	bioD	LU632_RS12300	0.20	-0.9
2,337,298	-	bioD	LU632_RS12300	0.20	-0.6
2,337,312	+	bioD	LU632_RS12300	0.22	-0.0
2,337,313	-	bioD	LU632_RS12300	0.22	-1.1
2,337,313	-	bioD	LU632_RS12300	0.22	-0.7
2,337,409	+	bioD	LU632_RS12300	0.37	-0.2
2,337,550	+	bioD	LU632_RS12300	0.58	+0.7
2,337,550	+	bioD	LU632_RS12300	0.58	+2.3
2,337,659	-	bioD	LU632_RS12300	0.74	+0.0
2,337,664	+	bioD	LU632_RS12300	0.75	-1.7
2,337,676	-	bioD	LU632_RS12300	0.76	-0.1
2,337,821	-				+0.2
2,337,821	-				-1.0
2,337,904	-				-2.1
2,337,954	-				+0.7
2,338,109	+				-1.0
2,338,110	-				+0.2