Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12270

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
2,332,513	-				-0.8
2,332,520	+				-0.1
2,332,520	+				+0.9
2,332,520	+				+1.5
2,332,520	+				-0.1
2,332,520	+				-3.4
2,332,520	+				-1.8
2,332,520	+				+0.2
2,332,521	-				-0.3
2,332,521	-				+0.8
2,332,521	-				-0.9
2,332,522	+				-1.7
2,332,522	+				-1.7
2,332,522	+				-0.3
2,332,522	+				+0.7
2,332,523	-				-3.6
2,332,523	-				+1.3
2,332,523	-				+1.9
2,332,537	+				-0.7
2,332,538	-				-1.3
2,332,538	-				-0.5
2,332,538	-				-1.5
2,332,538	-				+0.2
2,332,538	-				-1.6
2,332,630	+		LU632_RS12270	0.14	+0.2
2,332,718	-		LU632_RS12270	0.39	-1.7
2,332,931	+				-0.4
2,332,931	+				-0.2
2,332,948	+				+0.1
2,332,981	+				-0.4
2,332,994	+				+0.6
2,333,129	-		LU632_RS12275	0.52	-2.3
2,333,187	-		LU632_RS12275	0.70	+0.9
2,333,205	-		LU632_RS12275	0.76	+1.6
2,333,440	-				-0.7
2,333,449	+				+1.8
2,333,450	+				+0.8
2,333,450	-				+1.0
2,333,481	+				+0.5
2,333,502	-				-0.1
2,333,699	+				-1.3
2,333,699	+				+1.4
2,333,699	+				+0.3
2,333,700	-				+0.5
2,333,700	-				-1.5
2,333,700	-				-0.5
2,333,775	+				-1.0
2,333,775	+				+0.2
2,333,876	+		LU632_RS12280	0.18	-0.8
2,333,876	+		LU632_RS12280	0.18	+2.9
2,333,876	+		LU632_RS12280	0.18	-1.0
2,333,876	+		LU632_RS12280	0.18	+1.3
2,333,876	+		LU632_RS12280	0.18	+0.8
2,333,877	-		LU632_RS12280	0.19	-0.1