Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12005

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
2,278,920	+		LU632_RS12000	0.35	-0.7
2,278,920	+		LU632_RS12000	0.35	-1.3
2,278,920	+		LU632_RS12000	0.35	-0.1
2,278,921	-		LU632_RS12000	0.35	-0.5
2,278,978	-		LU632_RS12000	0.42	+0.5
2,279,025	+		LU632_RS12000	0.47	-0.2
2,279,025	+		LU632_RS12000	0.47	+1.2
2,279,148	+		LU632_RS12000	0.62	-1.2
2,279,148	+		LU632_RS12000	0.62	+1.1
2,279,148	+		LU632_RS12000	0.62	+0.6
2,279,148	+		LU632_RS12000	0.62	-0.1
2,279,148	+		LU632_RS12000	0.62	+0.7
2,279,148	+		LU632_RS12000	0.62	-0.2
2,279,149	-		LU632_RS12000	0.62	+1.0
2,279,149	-		LU632_RS12000	0.62	-0.4
2,279,149	-		LU632_RS12000	0.62	-1.6
2,279,149	-		LU632_RS12000	0.62	-1.0
2,279,149	-		LU632_RS12000	0.62	+0.6
2,279,149	-		LU632_RS12000	0.62	-0.2
2,279,149	-		LU632_RS12000	0.62	+1.1
2,279,322	+		LU632_RS12000	0.83	-1.8
2,279,323	-		LU632_RS12000	0.83	+0.7
2,279,323	-		LU632_RS12000	0.83	+0.8
2,279,433	+				+0.5
2,279,515	-				-1.2
2,279,522	+				-1.1
2,279,523	-				-2.1
2,279,576	+				-1.2
2,279,578	+				-2.0
2,279,607	+				-1.2
2,279,607	+				-0.5
2,279,609	+				-1.0
2,279,609	+				+1.0
2,279,609	+				+0.2
2,279,609	+				+0.7
2,279,610	-				+0.4
2,279,610	-				+0.2
2,279,610	-				-0.9
2,279,610	-				-1.1
2,279,610	-				-0.9
2,279,610	-				+0.8
2,279,611	+				-0.1
2,279,650	+				-0.6
2,279,652	+				-2.7
2,279,653	-				+0.3
2,279,653	-				-0.6
2,279,666	+				-1.0
2,279,694	+				-2.2
2,280,905	+				-1.5
2,280,951	+				+1.9
2,280,993	-		LU632_RS12010	0.11	-0.1
2,281,040	-		LU632_RS12010	0.18	+1.0
2,281,088	-		LU632_RS12010	0.24	-0.2
2,281,108	+		LU632_RS12010	0.27	-1.4
2,281,109	-		LU632_RS12010	0.27	-0.5
2,281,109	-		LU632_RS12010	0.27	+0.4
2,281,111	-		LU632_RS12010	0.28	-1.0
2,281,125	+		LU632_RS12010	0.29	-1.7
2,281,125	+		LU632_RS12010	0.29	+1.1
2,281,156	-		LU632_RS12010	0.34	-0.3
2,281,232	+		LU632_RS12010	0.44	-1.8
2,281,244	+		LU632_RS12010	0.46	-1.4
2,281,301	-		LU632_RS12010	0.54	+1.3
2,281,428	+		LU632_RS12010	0.72	-2.8
2,281,429	-		LU632_RS12010	0.72	+0.8
2,281,448	+		LU632_RS12010	0.74	-1.1
2,281,448	+		LU632_RS12010	0.74	-1.1
2,281,449	-		LU632_RS12010	0.74	+0.1
2,281,449	-		LU632_RS12010	0.74	+0.7
2,281,450	+		LU632_RS12010	0.75	-1.4
2,281,450	+		LU632_RS12010	0.75	+0.1
2,281,450	+		LU632_RS12010	0.75	+0.6
2,281,451	-		LU632_RS12010	0.75	-1.5
2,281,451	-		LU632_RS12010	0.75	+1.0
2,281,469	-		LU632_RS12010	0.77	+0.9
2,281,504	+		LU632_RS12010	0.82	+0.4
2,281,505	-		LU632_RS12010	0.82	+0.8
2,281,632	+				-0.4
2,281,633	-				+0.2
2,281,633	-				-1.1
2,281,634	+				-1.3
2,281,634	+				+0.3
2,281,634	+				+0.0
2,281,635	-				+0.1