Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11950

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
2,261,659	-		LU632_RS11945	0.49	+0.3
2,261,686	-		LU632_RS11945	0.50	+0.7
2,261,718	+		LU632_RS11945	0.53	+0.0
2,261,719	-		LU632_RS11945	0.53	-0.4
2,261,719	-		LU632_RS11945	0.53	-0.7
2,261,719	-		LU632_RS11945	0.53	-0.6
2,261,719	-		LU632_RS11945	0.53	+2.2
2,261,723	-		LU632_RS11945	0.53	+0.1
2,261,750	+		LU632_RS11945	0.55	-2.0
2,261,821	+		LU632_RS11945	0.60	+0.7
2,261,854	-		LU632_RS11945	0.63	-0.5
2,262,368	-				+0.3
2,262,397	-				-0.9
2,262,553	+				-1.1
2,262,607	-				-1.5
2,263,041	+		LU632_RS11950	0.22	+0.5
2,263,041	+		LU632_RS11950	0.22	+2.9
2,263,041	-		LU632_RS11950	0.22	-0.2
2,263,159	-		LU632_RS11950	0.26	-0.3
2,263,204	+		LU632_RS11950	0.28	+0.2
2,263,204	+		LU632_RS11950	0.28	-0.9
2,263,205	-		LU632_RS11950	0.28	-0.1
2,263,205	-		LU632_RS11950	0.28	-0.6
2,263,217	+		LU632_RS11950	0.28	+1.6
2,263,218	-		LU632_RS11950	0.28	-0.9
2,263,460	-		LU632_RS11950	0.36	-0.5
2,263,460	-		LU632_RS11950	0.36	-0.5
2,263,568	-		LU632_RS11950	0.40	-0.4
2,263,569	+		LU632_RS11950	0.40	+0.9
2,263,613	-		LU632_RS11950	0.41	+0.3
2,263,955	-		LU632_RS11950	0.53	-1.5
2,264,007	+		LU632_RS11950	0.55	-0.5
2,264,007	+		LU632_RS11950	0.55	-1.0
2,264,184	+		LU632_RS11950	0.61	+0.8
2,264,185	-		LU632_RS11950	0.61	-0.5
2,264,204	+		LU632_RS11950	0.61	+0.1
2,264,204	+		LU632_RS11950	0.61	-0.6
2,264,204	+		LU632_RS11950	0.61	+1.3
2,264,204	+		LU632_RS11950	0.61	-3.7
2,264,204	+		LU632_RS11950	0.61	+0.7
2,264,204	+		LU632_RS11950	0.61	+0.9
2,264,205	-		LU632_RS11950	0.61	-0.9
2,264,205	-		LU632_RS11950	0.61	-0.7
2,264,205	-		LU632_RS11950	0.61	+1.0
2,264,205	-		LU632_RS11950	0.61	-0.0
2,264,205	-		LU632_RS11950	0.61	-1.4
2,264,227	+		LU632_RS11950	0.62	+0.8
2,264,227	+		LU632_RS11950	0.62	-2.4
2,264,227	+		LU632_RS11950	0.62	+1.0
2,264,228	-		LU632_RS11950	0.62	+0.2
2,264,228	-		LU632_RS11950	0.62	+0.5
2,264,229	+		LU632_RS11950	0.62	+0.3
2,264,230	-		LU632_RS11950	0.62	-0.1
2,264,230	-		LU632_RS11950	0.62	-1.5
2,264,230	-		LU632_RS11950	0.62	-1.0
2,264,487	+		LU632_RS11950	0.71	-0.5
2,264,488	-		LU632_RS11950	0.71	+0.2
2,264,488	-		LU632_RS11950	0.71	+0.2
2,264,492	-		LU632_RS11950	0.71	+0.1
2,264,561	+		LU632_RS11950	0.73	-1.8
2,264,848	-		LU632_RS11950	0.83	+0.9
2,264,862	-		LU632_RS11950	0.83	-2.7
2,264,917	+		LU632_RS11950	0.85	-1.7
2,264,918	-		LU632_RS11950	0.85	-2.1
2,264,926	-		LU632_RS11950	0.86	-0.6
2,264,945	+		LU632_RS11950	0.86	+0.0
2,264,946	-		LU632_RS11950	0.86	+1.2
2,264,946	-		LU632_RS11950	0.86	+0.1
2,264,961	-		LU632_RS11950	0.87	+1.3
2,265,016	-		LU632_RS11950	0.89	+1.9
2,265,044	+		LU632_RS11950	0.89	-1.3
2,265,077	+				-1.0
2,265,078	-				-1.0
2,265,078	-				-0.1
2,265,078	-				+0.8
2,265,078	-				+0.4
2,265,109	+				+1.6
2,265,250	-				+0.1
2,265,288	+				-0.8
2,265,288	+				-1.0
2,265,289	-				+1.1
2,265,289	-				+0.7
2,265,345	-				-0.6
2,265,346	+				+0.1
2,265,346	+				-1.5
2,265,346	+				+0.1
2,265,347	-				-0.2
2,265,347	-				-0.4
2,265,379	+				-2.0
2,265,380	-				-0.2
2,265,603	+		LU632_RS11955	0.10	-0.0
2,265,603	+		LU632_RS11955	0.10	-0.6
2,265,676	-		LU632_RS11955	0.13	-0.4
2,265,749	+		LU632_RS11955	0.17	+0.9
2,265,804	-		LU632_RS11955	0.19	-0.2
2,265,816	+		LU632_RS11955	0.19	-0.5
2,265,817	-		LU632_RS11955	0.19	-0.9
2,265,878	+		LU632_RS11955	0.22	+0.6
2,265,879	-		LU632_RS11955	0.22	+0.5
2,266,069	+		LU632_RS11955	0.30	-1.1
2,266,123	+		LU632_RS11955	0.32	-2.1
2,266,123	+		LU632_RS11955	0.32	-1.3
2,266,124	-		LU632_RS11955	0.32	-1.2
2,266,124	-		LU632_RS11955	0.32	-2.1
2,266,124	-		LU632_RS11955	0.32	+0.1
2,266,190	-		LU632_RS11955	0.35	+1.2
2,266,315	+		LU632_RS11955	0.40	+1.4
2,266,320	-		LU632_RS11955	0.40	+0.5