Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11425

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
2,178,576	-		LU632_RS11420	0.31	+0.3
2,178,670	+		LU632_RS11420	0.44	-0.7
2,178,778	-		LU632_RS11420	0.58	+2.1
2,179,575	+	uspE	LU632_RS11425	0.11	-0.7
2,179,576	-	uspE	LU632_RS11425	0.11	+1.3
2,179,677	+	uspE	LU632_RS11425	0.21	+1.1
2,179,735	-	uspE	LU632_RS11425	0.28	-0.6
2,179,735	-	uspE	LU632_RS11425	0.28	-0.1
2,179,788	-	uspE	LU632_RS11425	0.33	-1.8
2,180,034	-	uspE	LU632_RS11425	0.59	-2.4
2,180,091	+	uspE	LU632_RS11425	0.65	-2.8
2,180,123	-	uspE	LU632_RS11425	0.68	+2.5
2,180,207	+	uspE	LU632_RS11425	0.77	-1.2
2,180,368	-				+2.9
2,180,528	+				-0.6
2,180,530	+				-0.2
2,180,531	-				+0.9
2,180,531	-				-1.5
2,180,740	-	pntB	LU632_RS11430	0.15	-0.3
2,180,845	+	pntB	LU632_RS11430	0.23	+0.3
2,180,845	+	pntB	LU632_RS11430	0.23	-0.5
2,180,853	+	pntB	LU632_RS11430	0.23	+0.3
2,181,114	+	pntB	LU632_RS11430	0.42	+0.8
2,181,142	-	pntB	LU632_RS11430	0.44	+1.3
2,181,142	-	pntB	LU632_RS11430	0.44	+1.8
2,181,142	-	pntB	LU632_RS11430	0.44	+0.0
2,181,143	-	pntB	LU632_RS11430	0.44	-1.0
2,181,147	-	pntB	LU632_RS11430	0.45	+0.6
2,181,147	-	pntB	LU632_RS11430	0.45	-1.8
2,181,147	-	pntB	LU632_RS11430	0.45	+0.8
2,181,147	-	pntB	LU632_RS11430	0.45	-1.1
2,181,253	-	pntB	LU632_RS11430	0.52	+0.2
2,181,328	-	pntB	LU632_RS11430	0.58	+0.9
2,181,387	+	pntB	LU632_RS11430	0.62	-0.1
2,181,388	-	pntB	LU632_RS11430	0.62	-0.7