Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11000

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
2,100,784	-				-2.5
2,100,799	+				-0.7
2,100,884	-				-0.4
2,100,964	+				-0.1
2,101,047	+				-1.0
2,101,208	+				-0.6
2,101,301	+				-0.1
2,101,444	+				+1.4
2,101,445	-				-1.4
2,101,445	-				-0.3
2,101,445	-				-0.7
2,101,635	+				+0.4
2,101,712	-		LU632_RS11000	0.11	+0.2
2,101,810	+		LU632_RS11000	0.19	+0.4
2,101,810	+		LU632_RS11000	0.19	+0.4
2,101,810	+		LU632_RS11000	0.19	-0.0
2,101,810	+		LU632_RS11000	0.19	-0.3
2,101,810	+		LU632_RS11000	0.19	+2.1
2,101,811	-		LU632_RS11000	0.19	-0.3
2,101,811	-		LU632_RS11000	0.19	-2.5
2,101,811	-		LU632_RS11000	0.19	-2.4
2,101,811	-		LU632_RS11000	0.19	+0.5
2,101,811	-		LU632_RS11000	0.19	-2.6
2,101,811	-		LU632_RS11000	0.19	+0.5
2,101,811	-		LU632_RS11000	0.19	+0.8
2,101,811	-		LU632_RS11000	0.19	+0.5
2,101,811	-		LU632_RS11000	0.19	+0.1
2,102,210	-		LU632_RS11000	0.52	+0.1
2,102,281	-		LU632_RS11000	0.58	+0.7
2,102,563	+		LU632_RS11000	0.82	+0.6
2,102,594	-		LU632_RS11000	0.84	-0.2
2,102,594	-		LU632_RS11000	0.84	+0.2
2,102,622	+		LU632_RS11000	0.86	-0.6
2,102,623	-		LU632_RS11000	0.86	-0.0
2,102,625	+		LU632_RS11000	0.87	+0.4
2,102,625	+		LU632_RS11000	0.87	+0.4
2,102,625	+		LU632_RS11000	0.87	-1.6
2,102,626	-		LU632_RS11000	0.87	-1.4
2,102,626	-		LU632_RS11000	0.87	+0.4
2,102,626	-		LU632_RS11000	0.87	-0.7
2,102,701	+				-1.6
2,102,701	+				-0.4
2,102,702	-				+1.4
2,102,702	-				+0.6
2,102,733	+				-1.2
2,102,734	-				-0.8
2,102,739	+				-1.5
2,102,848	+				+1.2
2,102,849	-				-1.4
2,102,870	+				+0.3
2,102,871	-				+0.9
2,102,871	-				-0.7
2,102,943	+				+0.2
2,102,944	-				-0.9
2,102,944	-				+0.5
2,102,944	-				-1.6
2,102,951	-				+0.6
2,102,995	+				+0.0
2,103,016	+				-0.5
2,103,017	-				+0.4
2,103,050	+				-0.3
2,103,053	+				-0.2
2,103,054	-				-1.7
2,103,063	-				-2.6
2,103,085	+				-0.8
2,103,147	+				-3.0
2,103,148	-				-2.5
2,103,185	+		LU632_RS11005	0.11	+1.6
2,103,185	+		LU632_RS11005	0.11	+3.1
2,103,185	+		LU632_RS11005	0.11	+0.5
2,103,185	+		LU632_RS11005	0.11	-2.2
2,103,186	-		LU632_RS11005	0.11	+0.4
2,103,186	-		LU632_RS11005	0.11	-2.1
2,103,186	-		LU632_RS11005	0.11	+2.0
2,103,186	-		LU632_RS11005	0.11	+1.4
2,103,210	-		LU632_RS11005	0.13	-0.9
2,103,211	+		LU632_RS11005	0.13	+0.4
2,103,276	+		LU632_RS11005	0.17	+1.0
2,103,276	+		LU632_RS11005	0.17	+0.2
2,103,276	+		LU632_RS11005	0.17	+1.0
2,103,276	+		LU632_RS11005	0.17	-0.1
2,103,276	+		LU632_RS11005	0.17	+0.1
2,103,277	-		LU632_RS11005	0.17	+1.3
2,103,278	+		LU632_RS11005	0.17	-1.2
2,103,406	+		LU632_RS11005	0.26	-1.9
2,103,407	-		LU632_RS11005	0.26	+1.4
2,103,467	-		LU632_RS11005	0.30	-2.7
2,103,604	+		LU632_RS11005	0.39	+0.4
2,103,605	-		LU632_RS11005	0.39	+0.3