Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgM and flgA are separated by 100 nucleotides flgA and flgB are separated by 156 nucleotides flgB and flgC are separated by 6 nucleotides flgC and flgD are separated by 11 nucleotides
LU632_RS10385: flgM - anti-sigma-28 factor FlgM, at 1,984,755 to 1,985,060
flgM
LU632_RS10390: flgA - flagellar basal body P-ring formation protein FlgA, at 1,985,161 to 1,985,829
flgA
LU632_RS10395: flgB - flagellar basal body rod protein FlgB, at 1,985,986 to 1,986,396
flgB
LU632_RS10400: flgC - flagellar basal body rod protein FlgC, at 1,986,403 to 1,986,807
flgC
LU632_RS10405: flgD - flagellar hook assembly protein FlgD, at 1,986,819 to 1,987,502
flgD
Position (kb) 1985
1986
1987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1985.108 kb on - strand at 1985.170 kb on + strand at 1985.171 kb on - strand at 1985.172 kb on + strand at 1985.172 kb on + strand at 1985.267 kb on - strand, within flgA at 1985.334 kb on + strand, within flgA at 1985.499 kb on + strand, within flgA at 1985.531 kb on + strand, within flgA at 1985.531 kb on + strand, within flgA at 1985.531 kb on + strand, within flgA at 1985.531 kb on + strand, within flgA at 1985.531 kb on + strand, within flgA at 1985.531 kb on + strand, within flgA at 1985.531 kb on + strand, within flgA at 1985.532 kb on - strand, within flgA at 1985.532 kb on - strand, within flgA at 1985.532 kb on - strand, within flgA at 1985.691 kb on + strand, within flgA at 1985.833 kb on - strand at 1985.833 kb on - strand at 1985.947 kb on + strand at 1985.947 kb on + strand at 1986.072 kb on + strand, within flgB at 1986.072 kb on + strand, within flgB at 1986.079 kb on - strand, within flgB at 1986.202 kb on - strand, within flgB at 1986.245 kb on - strand, within flgB at 1986.245 kb on - strand, within flgB at 1986.372 kb on + strand at 1986.397 kb on + strand at 1986.397 kb on + strand at 1986.398 kb on - strand at 1986.398 kb on - strand at 1986.398 kb on - strand at 1986.417 kb on + strand at 1986.526 kb on + strand, within flgC at 1986.526 kb on + strand, within flgC at 1986.634 kb on + strand, within flgC at 1986.684 kb on + strand, within flgC at 1986.698 kb on + strand, within flgC at 1986.715 kb on - strand, within flgC at 1986.737 kb on - strand, within flgC at 1986.737 kb on - strand, within flgC at 1986.867 kb on - strand at 1986.872 kb on + strand at 1986.872 kb on + strand at 1986.872 kb on + strand at 1986.873 kb on - strand at 1986.873 kb on - strand at 1986.943 kb on + strand, within flgD at 1986.944 kb on - strand, within flgD at 1987.244 kb on - strand, within flgD at 1987.287 kb on - strand, within flgD at 1987.305 kb on - strand, within flgD at 1987.341 kb on + strand, within flgD at 1987.341 kb on + strand, within flgD at 1987.341 kb on + strand, within flgD at 1987.342 kb on - strand, within flgD at 1987.343 kb on + strand, within flgD at 1987.343 kb on + strand, within flgD at 1987.343 kb on + strand, within flgD at 1987.343 kb on + strand, within flgD at 1987.343 kb on + strand, within flgD at 1987.344 kb on - strand, within flgD at 1987.344 kb on - strand, within flgD
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 1,985,108 - -2.0 1,985,170 + +0.8 1,985,171 - +1.7 1,985,172 + -0.2 1,985,172 + +1.1 1,985,267 - flgA LU632_RS10390 0.16 -1.9 1,985,334 + flgA LU632_RS10390 0.26 +0.6 1,985,499 + flgA LU632_RS10390 0.51 +0.5 1,985,531 + flgA LU632_RS10390 0.55 -2.1 1,985,531 + flgA LU632_RS10390 0.55 -1.2 1,985,531 + flgA LU632_RS10390 0.55 +0.1 1,985,531 + flgA LU632_RS10390 0.55 -0.2 1,985,531 + flgA LU632_RS10390 0.55 -1.2 1,985,531 + flgA LU632_RS10390 0.55 +0.1 1,985,531 + flgA LU632_RS10390 0.55 +0.7 1,985,532 - flgA LU632_RS10390 0.55 +0.3 1,985,532 - flgA LU632_RS10390 0.55 +0.1 1,985,532 - flgA LU632_RS10390 0.55 -1.4 1,985,691 + flgA LU632_RS10390 0.79 -0.1 1,985,833 - -0.5 1,985,833 - +0.0 1,985,947 + -2.1 1,985,947 + +0.1 1,986,072 + flgB LU632_RS10395 0.21 +0.4 1,986,072 + flgB LU632_RS10395 0.21 +0.5 1,986,079 - flgB LU632_RS10395 0.23 -0.9 1,986,202 - flgB LU632_RS10395 0.53 +1.4 1,986,245 - flgB LU632_RS10395 0.63 +0.7 1,986,245 - flgB LU632_RS10395 0.63 +0.4 1,986,372 + +0.6 1,986,397 + +1.1 1,986,397 + +0.5 1,986,398 - -0.6 1,986,398 - +1.3 1,986,398 - -2.9 1,986,417 + -0.2 1,986,526 + flgC LU632_RS10400 0.30 +0.5 1,986,526 + flgC LU632_RS10400 0.30 -0.9 1,986,634 + flgC LU632_RS10400 0.57 -0.4 1,986,684 + flgC LU632_RS10400 0.69 -0.0 1,986,698 + flgC LU632_RS10400 0.73 +0.2 1,986,715 - flgC LU632_RS10400 0.77 +1.3 1,986,737 - flgC LU632_RS10400 0.82 -0.5 1,986,737 - flgC LU632_RS10400 0.82 +0.6 1,986,867 - +0.1 1,986,872 + +0.8 1,986,872 + -1.0 1,986,872 + -1.1 1,986,873 - +1.2 1,986,873 - +1.0 1,986,943 + flgD LU632_RS10405 0.18 -1.0 1,986,944 - flgD LU632_RS10405 0.18 -1.5 1,987,244 - flgD LU632_RS10405 0.62 +0.8 1,987,287 - flgD LU632_RS10405 0.68 -1.7 1,987,305 - flgD LU632_RS10405 0.71 -1.7 1,987,341 + flgD LU632_RS10405 0.76 +0.5 1,987,341 + flgD LU632_RS10405 0.76 -0.1 1,987,341 + flgD LU632_RS10405 0.76 +0.6 1,987,342 - flgD LU632_RS10405 0.76 -1.1 1,987,343 + flgD LU632_RS10405 0.77 +2.4 1,987,343 + flgD LU632_RS10405 0.77 +0.2 1,987,343 + flgD LU632_RS10405 0.77 -0.7 1,987,343 + flgD LU632_RS10405 0.77 -1.0 1,987,343 + flgD LU632_RS10405 0.77 -0.2 1,987,344 - flgD LU632_RS10405 0.77 -0.4 1,987,344 - flgD LU632_RS10405 0.77 -0.4
Or see this region's nucleotide sequence