Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10290

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,965,262	+		LU632_RS10280	0.20	+0.5
1,965,262	+		LU632_RS10280	0.20	+1.0
1,965,262	+		LU632_RS10280	0.20	-0.1
1,965,262	+		LU632_RS10280	0.20	+0.6
1,965,263	-		LU632_RS10280	0.21	-0.5
1,965,263	-		LU632_RS10280	0.21	+0.5
1,965,281	+		LU632_RS10280	0.28	+0.2
1,965,282	-		LU632_RS10280	0.29	+0.3
1,965,324	+		LU632_RS10280	0.46	-0.0
1,965,377	+		LU632_RS10280	0.68	+0.4
1,965,453	+				+1.5
1,965,454	-				-1.1
1,965,454	-				+0.3
1,965,457	+				+1.2
1,965,457	+				+2.8
1,965,458	-				-0.4
1,965,466	+				-0.5
1,965,466	+				+0.4
1,965,466	+				-3.0
1,965,467	-				+0.4
1,965,483	-				+1.2
1,965,578	+		LU632_RS10285	0.30	-2.6
1,965,579	-		LU632_RS10285	0.30	-1.9
1,965,716	+		LU632_RS10285	0.64	+1.8
1,965,716	+		LU632_RS10285	0.64	+2.9
1,965,716	+		LU632_RS10285	0.64	+1.1
1,965,717	-		LU632_RS10285	0.65	-1.2
1,965,717	-		LU632_RS10285	0.65	-0.4
1,965,717	-		LU632_RS10285	0.65	+0.6
1,965,717	-		LU632_RS10285	0.65	-0.4
1,965,717	-		LU632_RS10285	0.65	+3.0
1,965,717	-		LU632_RS10285	0.65	+1.2
1,965,740	-		LU632_RS10285	0.70	-0.7
1,965,949	+				+1.5
1,966,130	-				+0.6
1,966,198	+				-2.0
1,966,198	+				-2.1
1,966,199	-				-1.6
1,966,199	-				-1.0
1,966,199	-				-1.5
1,966,202	+				-0.7
1,966,203	-				+0.2
1,966,203	-				-1.8
1,966,203	-				-0.8
1,966,203	-				+0.3
1,966,203	-				+0.7
1,966,286	-		LU632_RS10290	0.15	-2.4
1,966,316	+		LU632_RS10290	0.20	-0.7
1,966,316	+		LU632_RS10290	0.20	-0.5
1,966,316	+		LU632_RS10290	0.20	+0.8
1,966,421	-		LU632_RS10290	0.39	-0.4
1,966,453	-		LU632_RS10290	0.44	+0.9
1,966,462	+		LU632_RS10290	0.46	-2.9
1,966,492	+		LU632_RS10290	0.51	-0.2
1,966,524	+		LU632_RS10290	0.57	-0.9
1,966,524	+		LU632_RS10290	0.57	+1.5
1,966,524	+		LU632_RS10290	0.57	+1.9
1,966,525	-		LU632_RS10290	0.57	-0.7
1,966,629	-		LU632_RS10290	0.76	-0.1
1,966,683	-		LU632_RS10290	0.86	-0.8
1,966,726	+				+0.9
1,966,729	+				-2.5
1,966,729	+				+0.6
1,966,730	-				-0.8
1,966,730	-				-0.9
1,966,730	-				+0.6
1,966,730	-				+1.4
1,966,730	-				-1.2
1,966,740	+				-1.7
1,966,742	+				+1.0
1,966,742	+				-1.1
1,966,748	+				-2.5
1,966,960	+				-2.1
1,966,963	-				-0.4
1,967,093	+				+1.4
1,967,093	+				-1.6
1,967,093	+				+2.0
1,967,093	+				+0.2
1,967,093	+				+0.2
1,967,093	+				+0.8
1,967,093	+				+1.0
1,967,093	+				-0.0
1,967,093	+				+0.8
1,967,094	-				+0.8
1,967,094	-				-1.5
1,967,094	-				+0.6
1,967,094	-				+0.3
1,967,094	-				-1.1
1,967,094	-				-1.9
1,967,095	+				+0.0
1,967,095	+				+0.4
1,967,095	+				+1.2
1,967,095	+				-1.0
1,967,096	-				-0.7
1,967,096	-				+3.7
1,967,096	-				-0.1
1,967,096	-				-0.8
1,967,135	+		LU632_RS10295	0.11	+0.6
1,967,375	+		LU632_RS10295	0.37	+1.0
1,967,412	+		LU632_RS10295	0.41	-1.4
1,967,420	+		LU632_RS10295	0.42	-1.7
1,967,613	-		LU632_RS10295	0.63	+0.1