Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mdoH and LU632_RS10280 are separated by 137 nucleotides LU632_RS10280 and LU632_RS10285 are separated by 6 nucleotides LU632_RS10285 and LU632_RS10290 are separated by 347 nucleotides
LU632_RS10275: mdoH - glucans biosynthesis glucosyltransferase MdoH, at 1,962,508 to 1,965,075
mdoH
LU632_RS10280: LU632_RS10280 - YceK/YidQ family lipoprotein, at 1,965,213 to 1,965,452
_RS10280
LU632_RS10285: LU632_RS10285 - MysB family protein, at 1,965,459 to 1,965,857
_RS10285
LU632_RS10290: LU632_RS10290 - DUF1440 domain-containing protein, at 1,966,205 to 1,966,762
_RS10290
Position (kb) 1965
1966 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1964.352 kb on + strand, within mdoH at 1964.705 kb on - strand, within mdoH at 1964.740 kb on + strand, within mdoH at 1964.782 kb on - strand, within mdoH at 1965.004 kb on + strand at 1965.005 kb on - strand at 1965.026 kb on - strand at 1965.262 kb on + strand, within LU632_RS10280 at 1965.262 kb on + strand, within LU632_RS10280 at 1965.262 kb on + strand, within LU632_RS10280 at 1965.262 kb on + strand, within LU632_RS10280 at 1965.263 kb on - strand, within LU632_RS10280 at 1965.263 kb on - strand, within LU632_RS10280 at 1965.281 kb on + strand, within LU632_RS10280 at 1965.282 kb on - strand, within LU632_RS10280 at 1965.324 kb on + strand, within LU632_RS10280 at 1965.377 kb on + strand, within LU632_RS10280 at 1965.453 kb on + strand at 1965.454 kb on - strand at 1965.454 kb on - strand at 1965.457 kb on + strand at 1965.457 kb on + strand at 1965.458 kb on - strand at 1965.466 kb on + strand at 1965.466 kb on + strand at 1965.466 kb on + strand at 1965.467 kb on - strand at 1965.483 kb on - strand at 1965.578 kb on + strand, within LU632_RS10285 at 1965.579 kb on - strand, within LU632_RS10285 at 1965.716 kb on + strand, within LU632_RS10285 at 1965.716 kb on + strand, within LU632_RS10285 at 1965.716 kb on + strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.717 kb on - strand, within LU632_RS10285 at 1965.740 kb on - strand, within LU632_RS10285 at 1965.949 kb on + strand at 1966.130 kb on - strand at 1966.198 kb on + strand at 1966.198 kb on + strand at 1966.199 kb on - strand at 1966.199 kb on - strand at 1966.199 kb on - strand at 1966.202 kb on + strand at 1966.203 kb on - strand at 1966.203 kb on - strand at 1966.203 kb on - strand at 1966.203 kb on - strand at 1966.203 kb on - strand at 1966.286 kb on - strand, within LU632_RS10290 at 1966.316 kb on + strand, within LU632_RS10290 at 1966.316 kb on + strand, within LU632_RS10290 at 1966.316 kb on + strand, within LU632_RS10290 at 1966.421 kb on - strand, within LU632_RS10290
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2) remove 1,964,352 + mdoH LU632_RS10275 0.72 -0.6 1,964,705 - mdoH LU632_RS10275 0.86 -2.0 1,964,740 + mdoH LU632_RS10275 0.87 -2.7 1,964,782 - mdoH LU632_RS10275 0.89 -0.9 1,965,004 + -2.5 1,965,005 - -0.6 1,965,026 - -1.4 1,965,262 + LU632_RS10280 0.20 +0.5 1,965,262 + LU632_RS10280 0.20 +1.0 1,965,262 + LU632_RS10280 0.20 -0.1 1,965,262 + LU632_RS10280 0.20 +0.6 1,965,263 - LU632_RS10280 0.21 -0.5 1,965,263 - LU632_RS10280 0.21 +0.5 1,965,281 + LU632_RS10280 0.28 +0.2 1,965,282 - LU632_RS10280 0.29 +0.3 1,965,324 + LU632_RS10280 0.46 -0.0 1,965,377 + LU632_RS10280 0.68 +0.4 1,965,453 + +1.5 1,965,454 - -1.1 1,965,454 - +0.3 1,965,457 + +1.2 1,965,457 + +2.8 1,965,458 - -0.4 1,965,466 + -0.5 1,965,466 + +0.4 1,965,466 + -3.0 1,965,467 - +0.4 1,965,483 - +1.2 1,965,578 + LU632_RS10285 0.30 -2.6 1,965,579 - LU632_RS10285 0.30 -1.9 1,965,716 + LU632_RS10285 0.64 +1.8 1,965,716 + LU632_RS10285 0.64 +2.9 1,965,716 + LU632_RS10285 0.64 +1.1 1,965,717 - LU632_RS10285 0.65 -1.2 1,965,717 - LU632_RS10285 0.65 -0.4 1,965,717 - LU632_RS10285 0.65 +0.6 1,965,717 - LU632_RS10285 0.65 -0.4 1,965,717 - LU632_RS10285 0.65 +3.0 1,965,717 - LU632_RS10285 0.65 +1.2 1,965,740 - LU632_RS10285 0.70 -0.7 1,965,949 + +1.5 1,966,130 - +0.6 1,966,198 + -2.0 1,966,198 + -2.1 1,966,199 - -1.6 1,966,199 - -1.0 1,966,199 - -1.5 1,966,202 + -0.7 1,966,203 - +0.2 1,966,203 - -1.8 1,966,203 - -0.8 1,966,203 - +0.3 1,966,203 - +0.7 1,966,286 - LU632_RS10290 0.15 -2.4 1,966,316 + LU632_RS10290 0.20 -0.7 1,966,316 + LU632_RS10290 0.20 -0.5 1,966,316 + LU632_RS10290 0.20 +0.8 1,966,421 - LU632_RS10290 0.39 -0.4
Or see this region's nucleotide sequence