Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS10180

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,947,845	+				+0.2
1,947,846	-				+0.2
1,947,868	+				+0.5
1,948,015	+				-1.5
1,948,090	+				-0.8
1,948,091	-				-1.8
1,948,145	-		LU632_RS10170	0.20	-0.1
1,948,215	+		LU632_RS10170	0.37	-2.5
1,948,424	+		LU632_RS10170	0.90	-3.2
1,948,425	-				+1.0
1,948,425	-				+2.7
1,948,426	+				-0.6
1,948,427	-				-0.5
1,948,452	+				+0.4
1,948,491	+				-1.0
1,948,675	+				-0.6
1,948,760	-				+0.7
1,948,804	+				+1.2
1,948,805	-				+1.1
1,948,810	-				+1.9
1,948,817	+				+1.2
1,948,818	-				+1.3
1,948,821	+				+0.7
1,948,838	+				+4.3
1,948,838	+				+0.2
1,948,838	+				+3.8
1,948,944	+		LU632_RS10180	0.21	+1.3
1,949,212	-		LU632_RS10180	0.64	+2.7
1,949,317	+		LU632_RS10180	0.81	+0.0
1,949,317	+		LU632_RS10180	0.81	-1.4
1,949,547	+				+0.2
1,949,552	+				+0.6
1,949,655	+				+1.8
1,949,657	+				+1.1
1,949,744	+		LU632_RS10185	0.37	-0.0
1,949,745	-		LU632_RS10185	0.37	+1.1
1,949,907	-				-0.4
1,949,970	-				+1.0
1,949,974	+				+0.6
1,950,026	+				-1.7
1,950,058	+				+0.8
1,950,096	+				+0.6