Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09840

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,874,631	-		LU632_RS09835	0.28	-0.7
1,874,686	+		LU632_RS09835	0.33	-0.6
1,874,686	+		LU632_RS09835	0.33	+0.3
1,874,687	-		LU632_RS09835	0.33	+1.1
1,874,841	+		LU632_RS09835	0.45	+0.3
1,874,842	-		LU632_RS09835	0.46	-0.7
1,874,843	+		LU632_RS09835	0.46	+0.3
1,874,844	-		LU632_RS09835	0.46	-1.4
1,874,861	-		LU632_RS09835	0.47	+0.1
1,874,861	-		LU632_RS09835	0.47	+0.7
1,874,863	+		LU632_RS09835	0.47	+0.5
1,874,864	-		LU632_RS09835	0.47	-1.2
1,874,864	-		LU632_RS09835	0.47	-0.1
1,874,883	+		LU632_RS09835	0.49	-3.5
1,874,883	+		LU632_RS09835	0.49	-0.9
1,874,883	+		LU632_RS09835	0.49	+2.5
1,874,883	+		LU632_RS09835	0.49	+0.1
1,874,883	+		LU632_RS09835	0.49	+0.4
1,874,883	+		LU632_RS09835	0.49	-1.4
1,874,884	-		LU632_RS09835	0.49	+0.2
1,874,884	-		LU632_RS09835	0.49	-0.7
1,874,884	-		LU632_RS09835	0.49	+1.3
1,874,884	-		LU632_RS09835	0.49	-0.3
1,874,884	-		LU632_RS09835	0.49	-0.3
1,874,884	-		LU632_RS09835	0.49	+1.6
1,874,890	+		LU632_RS09835	0.50	+0.3
1,875,077	+		LU632_RS09835	0.65	-1.5
1,875,077	+		LU632_RS09835	0.65	-0.1
1,875,077	+		LU632_RS09835	0.65	+2.0
1,875,083	+		LU632_RS09835	0.66	-0.3
1,875,084	-		LU632_RS09835	0.66	-1.0
1,875,084	-		LU632_RS09835	0.66	+0.1
1,875,128	+		LU632_RS09835	0.69	+1.1
1,875,128	+		LU632_RS09835	0.69	+1.6
1,875,128	+		LU632_RS09835	0.69	+1.6
1,875,218	+		LU632_RS09835	0.77	+0.7
1,875,218	+		LU632_RS09835	0.77	+0.1
1,875,218	+		LU632_RS09835	0.77	-0.5
1,875,218	+		LU632_RS09835	0.77	-0.1
1,875,220	+		LU632_RS09835	0.77	-2.0
1,875,242	+		LU632_RS09835	0.79	+0.2
1,875,243	-		LU632_RS09835	0.79	+0.9
1,875,496	-				-0.2
1,875,538	-				+2.5
1,875,538	-				-0.9
1,875,538	-				+1.3
1,876,508	-				-0.1
1,876,508	-				-3.2
1,876,614	-				-2.0
1,876,621	-				-2.6
1,876,645	+				-0.3
1,876,676	+				+1.5
1,876,751	+		LU632_RS09850	0.31	+0.0
1,876,751	+		LU632_RS09850	0.31	+1.7
1,876,752	-		LU632_RS09850	0.32	-0.8