Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09350

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,770,775	+				+0.3
1,770,837	-				-1.3
1,770,848	+				+0.8
1,770,849	-				-0.2
1,770,849	-				+0.6
1,770,929	+		LU632_RS09350	0.21	-2.4
1,771,012	-				-0.1
1,771,027	-				+1.3
1,771,052	-				+0.8
1,771,052	-				+0.1
1,771,052	-				+0.9
1,771,229	+		LU632_RS09355	0.25	+0.8
1,771,230	-		LU632_RS09355	0.26	-0.5
1,771,230	-		LU632_RS09355	0.26	+0.9
1,771,250	-		LU632_RS09355	0.29	-0.0
1,771,559	+		LU632_RS09355	0.87	-1.1
1,771,560	-		LU632_RS09355	0.87	-1.6
1,771,560	-		LU632_RS09355	0.87	+0.3
1,771,560	-		LU632_RS09355	0.87	-0.9
1,771,564	-		LU632_RS09355	0.88	-1.2
1,771,564	-		LU632_RS09355	0.88	+1.5
1,771,699	+				+3.4
1,771,708	+				-1.6
1,771,777	+		LU632_RS09360	0.12	+0.0
1,771,810	+		LU632_RS09360	0.15	+0.1
1,771,845	-		LU632_RS09360	0.18	+0.2
1,771,877	+		LU632_RS09360	0.20	+0.5
1,771,878	+		LU632_RS09360	0.20	-0.0
1,771,911	-		LU632_RS09360	0.23	-1.5