Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09270

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntpbpG and LU632_RS09270 are separated by 93 nucleotidesLU632_RS09270 and LU632_RS09275 are separated by 39 nucleotidesLU632_RS09275 and LU632_RS09280 overlap by 10 nucleotidesLU632_RS09280 and LU632_RS09285 are separated by 21 nucleotides LU632_RS09265: pbpG - D-alanyl-D-alanine endopeptidase, at 1,748,492 to 1,749,433 pbpG LU632_RS09270: LU632_RS09270 - DUF3772 domain-containing protein, at 1,749,527 to 1,751,965 _RS09270 LU632_RS09275: LU632_RS09275 - hypothetical protein, at 1,752,005 to 1,752,235 _RS09275 LU632_RS09280: LU632_RS09280 - tautomerase family protein, at 1,752,226 to 1,752,453 _RS09280 LU632_RS09285: LU632_RS09285 - pseudouridine-5'-phosphate glycosidase, at 1,752,475 to 1,753,410 _RS09285 Position (kb) 1749 1750 1751 1752Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1748.661 kb on - strand, within pbpGat 1748.661 kb on - strand, within pbpGat 1748.661 kb on - strand, within pbpGat 1748.661 kb on - strand, within pbpGat 1748.802 kb on - strand, within pbpGat 1748.842 kb on + strand, within pbpGat 1749.039 kb on + strand, within pbpGat 1749.059 kb on + strand, within pbpGat 1749.122 kb on + strand, within pbpGat 1749.123 kb on - strand, within pbpGat 1749.123 kb on - strand, within pbpGat 1749.175 kb on + strand, within pbpGat 1749.176 kb on - strand, within pbpGat 1749.288 kb on - strand, within pbpGat 1749.288 kb on - strand, within pbpGat 1749.371 kb on + strandat 1749.373 kb on + strandat 1749.374 kb on - strandat 1749.436 kb on - strandat 1749.436 kb on - strandat 1749.464 kb on - strandat 1749.820 kb on - strand, within LU632_RS09270at 1749.870 kb on + strand, within LU632_RS09270at 1750.378 kb on + strand, within LU632_RS09270at 1750.378 kb on + strand, within LU632_RS09270at 1750.378 kb on + strand, within LU632_RS09270at 1750.432 kb on + strand, within LU632_RS09270at 1750.709 kb on - strand, within LU632_RS09270at 1750.848 kb on - strand, within LU632_RS09270at 1750.886 kb on + strand, within LU632_RS09270at 1750.889 kb on - strand, within LU632_RS09270at 1750.889 kb on - strand, within LU632_RS09270at 1750.939 kb on + strand, within LU632_RS09270at 1750.939 kb on + strand, within LU632_RS09270at 1750.940 kb on - strand, within LU632_RS09270at 1750.940 kb on - strand, within LU632_RS09270at 1750.940 kb on - strand, within LU632_RS09270at 1751.170 kb on - strand, within LU632_RS09270at 1751.201 kb on - strand, within LU632_RS09270at 1751.204 kb on + strand, within LU632_RS09270at 1751.205 kb on - strand, within LU632_RS09270at 1751.205 kb on - strand, within LU632_RS09270at 1751.208 kb on + strand, within LU632_RS09270at 1751.209 kb on - strand, within LU632_RS09270at 1751.312 kb on + strand, within LU632_RS09270at 1751.470 kb on - strand, within LU632_RS09270at 1751.492 kb on - strand, within LU632_RS09270at 1751.591 kb on - strand, within LU632_RS09270at 1751.887 kb on - strandat 1751.989 kb on + strandat 1751.990 kb on - strandat 1752.034 kb on - strand, within LU632_RS09275at 1752.123 kb on + strand, within LU632_RS09275at 1752.158 kb on - strand, within LU632_RS09275at 1752.227 kb on + strandat 1752.227 kb on + strandat 1752.227 kb on + strandat 1752.227 kb on + strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.228 kb on - strandat 1752.233 kb on + strandat 1752.234 kb on - strandat 1752.274 kb on - strand, within LU632_RS09280at 1752.274 kb on - strand, within LU632_RS09280at 1752.275 kb on + strand, within LU632_RS09280at 1752.275 kb on + strand, within LU632_RS09280at 1752.275 kb on + strand, within LU632_RS09280at 1752.500 kb on + strandat 1752.542 kb on - strandat 1752.893 kb on + strand, within LU632_RS09285at 1752.894 kb on - strand, within LU632_RS09285at 1752.943 kb on + strand, within LU632_RS09285

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
remove
1,748,661 - pbpG LU632_RS09265 0.18 -0.0
1,748,661 - pbpG LU632_RS09265 0.18 +0.1
1,748,661 - pbpG LU632_RS09265 0.18 -2.2
1,748,661 - pbpG LU632_RS09265 0.18 -1.0
1,748,802 - pbpG LU632_RS09265 0.33 -0.7
1,748,842 + pbpG LU632_RS09265 0.37 -2.6
1,749,039 + pbpG LU632_RS09265 0.58 -0.1
1,749,059 + pbpG LU632_RS09265 0.60 +0.4
1,749,122 + pbpG LU632_RS09265 0.67 -2.0
1,749,123 - pbpG LU632_RS09265 0.67 -2.9
1,749,123 - pbpG LU632_RS09265 0.67 -0.1
1,749,175 + pbpG LU632_RS09265 0.73 +0.0
1,749,176 - pbpG LU632_RS09265 0.73 -1.9
1,749,288 - pbpG LU632_RS09265 0.85 -0.4
1,749,288 - pbpG LU632_RS09265 0.85 +0.7
1,749,371 + +0.0
1,749,373 + +0.3
1,749,374 - +0.7
1,749,436 - -3.7
1,749,436 - +0.5
1,749,464 - -0.8
1,749,820 - LU632_RS09270 0.12 -1.1
1,749,870 + LU632_RS09270 0.14 -0.0
1,750,378 + LU632_RS09270 0.35 -2.6
1,750,378 + LU632_RS09270 0.35 +0.6
1,750,378 + LU632_RS09270 0.35 -0.7
1,750,432 + LU632_RS09270 0.37 -1.1
1,750,709 - LU632_RS09270 0.48 -1.1
1,750,848 - LU632_RS09270 0.54 -0.6
1,750,886 + LU632_RS09270 0.56 -0.1
1,750,889 - LU632_RS09270 0.56 +0.4
1,750,889 - LU632_RS09270 0.56 +0.2
1,750,939 + LU632_RS09270 0.58 -4.0
1,750,939 + LU632_RS09270 0.58 +0.6
1,750,940 - LU632_RS09270 0.58 +0.3
1,750,940 - LU632_RS09270 0.58 -0.2
1,750,940 - LU632_RS09270 0.58 +2.2
1,751,170 - LU632_RS09270 0.67 -0.1
1,751,201 - LU632_RS09270 0.69 -3.6
1,751,204 + LU632_RS09270 0.69 -2.3
1,751,205 - LU632_RS09270 0.69 +3.3
1,751,205 - LU632_RS09270 0.69 -1.5
1,751,208 + LU632_RS09270 0.69 +0.2
1,751,209 - LU632_RS09270 0.69 +1.5
1,751,312 + LU632_RS09270 0.73 -1.1
1,751,470 - LU632_RS09270 0.80 -0.9
1,751,492 - LU632_RS09270 0.81 +1.7
1,751,591 - LU632_RS09270 0.85 -2.0
1,751,887 - -1.8
1,751,989 + -0.5
1,751,990 - +0.1
1,752,034 - LU632_RS09275 0.13 +2.5
1,752,123 + LU632_RS09275 0.51 -0.0
1,752,158 - LU632_RS09275 0.66 +1.5
1,752,227 + -0.4
1,752,227 + -0.8
1,752,227 + +0.2
1,752,227 + -0.0
1,752,228 - +0.9
1,752,228 - -0.9
1,752,228 - +0.1
1,752,228 - -0.1
1,752,228 - +1.7
1,752,228 - -0.3
1,752,228 - +0.8
1,752,233 + +1.0
1,752,234 - -0.2
1,752,274 - LU632_RS09280 0.21 -1.1
1,752,274 - LU632_RS09280 0.21 +0.5
1,752,275 + LU632_RS09280 0.21 -1.2
1,752,275 + LU632_RS09280 0.21 -0.1
1,752,275 + LU632_RS09280 0.21 -1.3
1,752,500 + -1.5
1,752,542 - +0.4
1,752,893 + LU632_RS09285 0.45 +2.5
1,752,894 - LU632_RS09285 0.45 -3.2
1,752,943 + LU632_RS09285 0.50 +0.2

Or see this region's nucleotide sequence