Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09105

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS09100 and LU632_RS09105 are separated by 621 nucleotidesLU632_RS09105 and LU632_RS09110 are separated by 56 nucleotidesLU632_RS09110 and LU632_RS09115 are separated by 22 nucleotides LU632_RS09100: LU632_RS09100 - NADP-dependent oxidoreductase, at 1,711,083 to 1,712,126 _RS09100 LU632_RS09105: LU632_RS09105 - fimbrial protein, at 1,712,748 to 1,713,347 _RS09105 LU632_RS09110: LU632_RS09110 - molecular chaperone, at 1,713,404 to 1,714,144 _RS09110 LU632_RS09115: LU632_RS09115 - fimbrial biogenesis outer membrane usher protein, at 1,714,167 to 1,716,689 _RS09115 Position (kb) 1712 1713 1714Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1711.763 kb on + strand, within LU632_RS09100at 1711.764 kb on - strand, within LU632_RS09100at 1711.859 kb on - strand, within LU632_RS09100at 1711.905 kb on + strand, within LU632_RS09100at 1711.906 kb on - strand, within LU632_RS09100at 1711.917 kb on + strand, within LU632_RS09100at 1711.918 kb on - strand, within LU632_RS09100at 1711.937 kb on - strand, within LU632_RS09100at 1711.937 kb on - strand, within LU632_RS09100at 1711.967 kb on + strand, within LU632_RS09100at 1711.967 kb on - strand, within LU632_RS09100at 1711.968 kb on - strand, within LU632_RS09100at 1711.968 kb on - strand, within LU632_RS09100at 1711.969 kb on + strand, within LU632_RS09100at 1711.969 kb on + strand, within LU632_RS09100at 1712.096 kb on + strandat 1712.097 kb on - strandat 1712.097 kb on - strandat 1712.764 kb on + strandat 1712.773 kb on + strandat 1712.972 kb on + strand, within LU632_RS09105at 1712.999 kb on + strand, within LU632_RS09105at 1713.005 kb on - strand, within LU632_RS09105at 1713.221 kb on - strand, within LU632_RS09105at 1713.228 kb on + strand, within LU632_RS09105at 1713.229 kb on - strand, within LU632_RS09105at 1713.251 kb on + strand, within LU632_RS09105at 1713.271 kb on - strand, within LU632_RS09105at 1713.273 kb on + strand, within LU632_RS09105at 1713.274 kb on - strand, within LU632_RS09105at 1713.274 kb on - strand, within LU632_RS09105at 1713.276 kb on - strand, within LU632_RS09105at 1713.279 kb on + strand, within LU632_RS09105at 1713.280 kb on - strand, within LU632_RS09105at 1713.280 kb on - strand, within LU632_RS09105at 1713.336 kb on - strandat 1713.340 kb on - strandat 1713.385 kb on - strandat 1713.567 kb on + strand, within LU632_RS09110at 1713.782 kb on + strand, within LU632_RS09110at 1713.783 kb on - strand, within LU632_RS09110at 1713.902 kb on - strand, within LU632_RS09110at 1713.995 kb on - strand, within LU632_RS09110at 1714.316 kb on + strandat 1714.347 kb on + strandat 1714.347 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
remove
1,711,763 + LU632_RS09100 0.65 -0.0
1,711,764 - LU632_RS09100 0.65 -0.6
1,711,859 - LU632_RS09100 0.74 +1.3
1,711,905 + LU632_RS09100 0.79 -0.4
1,711,906 - LU632_RS09100 0.79 -2.5
1,711,917 + LU632_RS09100 0.80 -1.0
1,711,918 - LU632_RS09100 0.80 +1.0
1,711,937 - LU632_RS09100 0.82 -0.9
1,711,937 - LU632_RS09100 0.82 +0.4
1,711,967 + LU632_RS09100 0.85 -0.4
1,711,967 - LU632_RS09100 0.85 -1.5
1,711,968 - LU632_RS09100 0.85 +1.6
1,711,968 - LU632_RS09100 0.85 +0.2
1,711,969 + LU632_RS09100 0.85 +0.4
1,711,969 + LU632_RS09100 0.85 +0.3
1,712,096 + +0.7
1,712,097 - +0.6
1,712,097 - +3.3
1,712,764 + +1.3
1,712,773 + -2.0
1,712,972 + LU632_RS09105 0.37 +0.1
1,712,999 + LU632_RS09105 0.42 -1.5
1,713,005 - LU632_RS09105 0.43 +0.3
1,713,221 - LU632_RS09105 0.79 +1.1
1,713,228 + LU632_RS09105 0.80 +0.5
1,713,229 - LU632_RS09105 0.80 +0.6
1,713,251 + LU632_RS09105 0.84 -1.0
1,713,271 - LU632_RS09105 0.87 -0.6
1,713,273 + LU632_RS09105 0.88 -0.7
1,713,274 - LU632_RS09105 0.88 +1.4
1,713,274 - LU632_RS09105 0.88 -0.1
1,713,276 - LU632_RS09105 0.88 -2.3
1,713,279 + LU632_RS09105 0.89 +0.2
1,713,280 - LU632_RS09105 0.89 -1.0
1,713,280 - LU632_RS09105 0.89 +5.1
1,713,336 - +0.3
1,713,340 - +2.3
1,713,385 - -0.2
1,713,567 + LU632_RS09110 0.22 -0.6
1,713,782 + LU632_RS09110 0.51 +4.7
1,713,783 - LU632_RS09110 0.51 +0.8
1,713,902 - LU632_RS09110 0.67 +0.2
1,713,995 - LU632_RS09110 0.80 -0.0
1,714,316 + -0.5
1,714,347 + -0.2
1,714,347 + -1.1

Or see this region's nucleotide sequence