Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08860

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,672,214	-				-0.3
1,672,493	+	rfbD	LU632_RS08855	0.27	-2.7
1,672,497	-	rfbD	LU632_RS08855	0.27	-1.8
1,672,497	-	rfbD	LU632_RS08855	0.27	-0.7
1,672,569	+	rfbD	LU632_RS08855	0.35	-1.0
1,672,570	-	rfbD	LU632_RS08855	0.36	+0.5
1,672,676	+	rfbD	LU632_RS08855	0.48	-2.4
1,672,683	-	rfbD	LU632_RS08855	0.48	-0.6
1,672,716	+	rfbD	LU632_RS08855	0.52	-1.3
1,672,716	+	rfbD	LU632_RS08855	0.52	+3.3
1,672,787	+	rfbD	LU632_RS08855	0.60	-1.0
1,672,790	-	rfbD	LU632_RS08855	0.60	-0.6
1,672,790	-	rfbD	LU632_RS08855	0.60	+0.7
1,672,939	-	rfbD	LU632_RS08855	0.77	-0.9
1,672,943	+	rfbD	LU632_RS08855	0.78	-0.4
1,672,946	+	rfbD	LU632_RS08855	0.78	+0.7
1,672,947	-	rfbD	LU632_RS08855	0.78	-0.9
1,673,055	-				-2.4
1,673,055	-				-0.1
1,673,055	-				-1.7
1,673,057	+				-1.0
1,673,058	-				-1.6
1,673,058	-				-1.9
1,673,132	-				+2.3
1,673,139	+				+1.5
1,673,156	+				+1.0
1,673,160	+				-0.7
1,673,161	-				-0.8
1,673,161	-				-3.4
1,673,180	+				-0.2
1,673,189	-				-0.5
1,673,206	+				-2.8
1,673,206	+				-2.5
1,673,206	+				-0.9
1,673,274	+				-2.0
1,673,275	-				-1.8
1,673,278	+	rfbA	LU632_RS08860	0.10	-0.9
1,673,300	+	rfbA	LU632_RS08860	0.13	+1.1
1,673,342	-	rfbA	LU632_RS08860	0.17	-3.0
1,673,415	+	rfbA	LU632_RS08860	0.26	-2.8
1,673,415	+	rfbA	LU632_RS08860	0.26	-1.2
1,673,416	-	rfbA	LU632_RS08860	0.26	-1.7
1,673,419	+	rfbA	LU632_RS08860	0.26	-1.4
1,673,419	-	rfbA	LU632_RS08860	0.26	-0.7
1,673,428	+	rfbA	LU632_RS08860	0.27	-1.1
1,673,429	-	rfbA	LU632_RS08860	0.27	-1.9
1,673,524	+	rfbA	LU632_RS08860	0.38	-0.9
1,673,525	-	rfbA	LU632_RS08860	0.38	-1.1
1,673,558	+	rfbA	LU632_RS08860	0.42	-2.0
1,673,695	+	rfbA	LU632_RS08860	0.57	-1.7
1,673,695	+	rfbA	LU632_RS08860	0.57	-1.9
1,673,696	-	rfbA	LU632_RS08860	0.57	-0.5
1,673,699	+	rfbA	LU632_RS08860	0.58	-0.4
1,673,700	-	rfbA	LU632_RS08860	0.58	+1.0
1,673,700	-	rfbA	LU632_RS08860	0.58	+0.4
1,673,803	+	rfbA	LU632_RS08860	0.70	-1.1
1,673,807	+	rfbA	LU632_RS08860	0.70	-0.4
1,673,808	-	rfbA	LU632_RS08860	0.70	-1.6
1,673,808	-	rfbA	LU632_RS08860	0.70	+0.0
1,673,808	-	rfbA	LU632_RS08860	0.70	-2.2
1,673,899	+	rfbA	LU632_RS08860	0.80	-1.7
1,673,916	+	rfbA	LU632_RS08860	0.82	+0.7
1,673,916	+	rfbA	LU632_RS08860	0.82	+0.3
1,673,916	+	rfbA	LU632_RS08860	0.82	-2.0
1,673,977	+	rfbA	LU632_RS08860	0.89	-1.4
1,674,222	+	rfbC	LU632_RS08865	0.27	-1.2
1,674,270	+	rfbC	LU632_RS08865	0.36	+1.7
1,674,317	+	rfbC	LU632_RS08865	0.45	-4.0
1,674,327	+	rfbC	LU632_RS08865	0.47	-0.9
1,674,387	+	rfbC	LU632_RS08865	0.58	-0.4
1,674,387	+	rfbC	LU632_RS08865	0.58	+0.5
1,674,431	-	rfbC	LU632_RS08865	0.66	-0.1
1,674,431	-	rfbC	LU632_RS08865	0.66	-0.4
1,674,463	-	rfbC	LU632_RS08865	0.71	-1.9
1,674,475	+	rfbC	LU632_RS08865	0.74	-0.0
1,674,476	-	rfbC	LU632_RS08865	0.74	-1.8
1,674,479	-	rfbC	LU632_RS08865	0.74	-1.7
1,674,498	+	rfbC	LU632_RS08865	0.78	-1.5
1,674,498	+	rfbC	LU632_RS08865	0.78	-3.7
1,674,498	+	rfbC	LU632_RS08865	0.78	-3.4
1,674,503	+	rfbC	LU632_RS08865	0.79	-1.9
1,674,619	+				-0.0
1,674,746	+				+0.8
1,674,781	+				-1.0
1,674,914	-		LU632_RS08870	0.16	-3.5
1,674,924	-		LU632_RS08870	0.17	-0.7