Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08820

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,660,748	+		LU632_RS08815	0.41	-3.4
1,660,921	-		LU632_RS08815	0.55	-3.7
1,660,982	+		LU632_RS08815	0.60	-0.4
1,660,982	+		LU632_RS08815	0.60	-5.0
1,661,335	-		LU632_RS08815	0.89	-4.2
1,661,335	-		LU632_RS08815	0.89	-2.8
1,661,581	-				-1.6
1,661,601	+		LU632_RS08820	0.10	-3.8
1,661,602	-		LU632_RS08820	0.10	-3.4
1,661,648	-		LU632_RS08820	0.14	-0.0
1,661,649	+		LU632_RS08820	0.14	-1.4
1,661,650	-		LU632_RS08820	0.14	-2.7
1,661,650	-		LU632_RS08820	0.14	-2.1
1,661,667	+		LU632_RS08820	0.15	-4.6
1,661,667	+		LU632_RS08820	0.15	-3.0
1,661,668	-		LU632_RS08820	0.15	-3.6
1,661,691	+		LU632_RS08820	0.17	-4.6
1,661,739	-		LU632_RS08820	0.21	-0.8
1,661,860	-		LU632_RS08820	0.30	-1.0
1,661,958	+		LU632_RS08820	0.37	-4.5
1,662,033	+		LU632_RS08820	0.42	-3.0
1,662,091	+		LU632_RS08820	0.47	-5.1
1,662,336	+		LU632_RS08820	0.65	-1.0
1,662,337	-		LU632_RS08820	0.65	-3.5
1,662,358	+		LU632_RS08820	0.67	-1.2
1,662,369	-		LU632_RS08820	0.67	-0.4
1,662,375	+		LU632_RS08820	0.68	-4.6
1,662,376	-		LU632_RS08820	0.68	-5.1
1,662,404	-		LU632_RS08820	0.70	-2.0
1,662,436	-		LU632_RS08820	0.72	-4.8
1,662,436	-		LU632_RS08820	0.72	-3.2
1,662,550	-		LU632_RS08820	0.81	-3.2
1,662,550	-		LU632_RS08820	0.81	-2.5
1,662,550	-		LU632_RS08820	0.81	-2.2
1,662,550	-		LU632_RS08820	0.81	-2.3
1,662,602	-		LU632_RS08820	0.85	-2.4
1,662,678	-				-5.1
1,662,698	-				-3.5
1,662,771	+				-2.9
1,662,929	+				+1.3
1,662,984	+				+2.1
1,662,984	+				+1.6
1,662,984	+				+2.2
1,663,010	-				+1.3
1,663,058	-				+2.3
1,663,112	+	galF	LU632_RS08825	0.13	+1.1
1,663,115	-	galF	LU632_RS08825	0.13	+3.6
1,663,208	+	galF	LU632_RS08825	0.23	+4.6
1,663,270	+	galF	LU632_RS08825	0.30	+1.6
1,663,270	+	galF	LU632_RS08825	0.30	+2.3
1,663,271	-	galF	LU632_RS08825	0.30	+3.0
1,663,294	+	galF	LU632_RS08825	0.33	+3.9
1,663,294	+	galF	LU632_RS08825	0.33	+2.7
1,663,354	+	galF	LU632_RS08825	0.40	+1.6
1,663,411	+	galF	LU632_RS08825	0.46	+1.3
1,663,483	-	galF	LU632_RS08825	0.54	+6.2
1,663,495	+	galF	LU632_RS08825	0.55	+1.9
1,663,495	+	galF	LU632_RS08825	0.55	-1.8
1,663,496	-	galF	LU632_RS08825	0.56	+2.2
1,663,520	+	galF	LU632_RS08825	0.58	+1.0
1,663,576	+	galF	LU632_RS08825	0.64	+1.2
1,663,774	+	galF	LU632_RS08825	0.87	+2.5