Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08740

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,640,627	-				+0.8
1,640,644	-				-0.1
1,640,682	+				-0.8
1,640,683	-				+0.2
1,640,706	-				-1.4
1,640,715	+				-0.1
1,640,718	+				-1.2
1,640,718	+				+1.3
1,640,719	-				-1.3
1,640,719	-				+0.5
1,640,763	+				-1.1
1,640,764	-				+1.8
1,640,946	-		LU632_RS08735	0.36	-0.4
1,640,980	-		LU632_RS08735	0.42	-0.7
1,640,998	+		LU632_RS08735	0.45	+0.4
1,640,999	-		LU632_RS08735	0.45	-0.5
1,641,043	+		LU632_RS08735	0.52	-0.3
1,641,043	+		LU632_RS08735	0.52	+1.2
1,641,043	+		LU632_RS08735	0.52	+1.5
1,641,044	-		LU632_RS08735	0.53	+0.0
1,641,044	-		LU632_RS08735	0.53	+1.1
1,641,048	+		LU632_RS08735	0.53	+1.4
1,641,048	+		LU632_RS08735	0.53	+0.1
1,641,156	-		LU632_RS08735	0.71	+1.8
1,641,190	-		LU632_RS08735	0.77	+0.2
1,641,317	+				-1.2
1,641,318	-				+0.6
1,641,318	-				+1.4
1,641,351	-				-1.2
1,641,398	+				-0.9
1,641,398	+				+1.6
1,641,399	-				-1.9
1,641,426	+				-2.1
1,641,447	+				+1.7
1,641,447	+				+1.3
1,641,448	-				+0.9
1,641,483	+				+0.7
1,641,572	+				+1.5
1,641,581	+				+1.3
1,641,581	+				+0.4
1,641,604	+				-0.2
1,641,604	+				-1.7
1,641,608	+				+1.6
1,641,608	+				-0.5
1,641,717	+	udk	LU632_RS08740	0.22	-1.4
1,641,720	+	udk	LU632_RS08740	0.23	+1.6
1,641,764	+	udk	LU632_RS08740	0.30	-2.0
1,641,855	+	udk	LU632_RS08740	0.44	+0.9
1,641,855	+	udk	LU632_RS08740	0.44	-0.0
1,641,855	+	udk	LU632_RS08740	0.44	+1.1
1,641,855	+	udk	LU632_RS08740	0.44	-0.1
1,642,019	+	udk	LU632_RS08740	0.69	-0.4
1,642,121	+	udk	LU632_RS08740	0.85	+1.2
1,642,121	+	udk	LU632_RS08740	0.85	+1.2
1,642,128	+	udk	LU632_RS08740	0.86	-1.5
1,642,128	+	udk	LU632_RS08740	0.86	-1.1
1,642,139	+	udk	LU632_RS08740	0.88	-0.6
1,642,139	+	udk	LU632_RS08740	0.88	+1.5
1,642,236	+				-0.2
1,642,979	-				-1.4
1,643,066	+				-2.9
1,643,068	+				+0.7
1,643,068	+				-1.0
1,643,068	+				-0.6
1,643,069	-				-2.9