Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS08210

Experiment: Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Cucumber 5 Petiole 2 (TE-S-C5-P2)
1,545,820	-				+0.5
1,545,852	-				+0.4
1,545,872	+				+0.8
1,545,888	+				+1.3
1,545,930	-				-2.0
1,546,063	+		LU632_RS08205	0.29	-1.6
1,546,063	+		LU632_RS08205	0.29	-1.0
1,546,064	-		LU632_RS08205	0.29	+0.9
1,546,064	-		LU632_RS08205	0.29	-0.2
1,546,077	+		LU632_RS08205	0.32	-0.8
1,546,077	+		LU632_RS08205	0.32	+0.2
1,546,077	+		LU632_RS08205	0.32	-1.6
1,546,081	+		LU632_RS08205	0.32	-0.5
1,546,111	+		LU632_RS08205	0.37	+0.5
1,546,111	+		LU632_RS08205	0.37	-1.7
1,546,112	-		LU632_RS08205	0.37	+0.5
1,546,234	+		LU632_RS08205	0.58	+3.8
1,546,236	+		LU632_RS08205	0.58	+1.2
1,546,236	+		LU632_RS08205	0.58	-2.0
1,546,237	-		LU632_RS08205	0.58	+1.8
1,546,237	-		LU632_RS08205	0.58	-0.5
1,546,247	+		LU632_RS08205	0.60	+2.0
1,546,293	-		LU632_RS08205	0.67	+0.6
1,546,293	-		LU632_RS08205	0.67	+0.9
1,546,347	+		LU632_RS08205	0.76	+1.6
1,546,347	+		LU632_RS08205	0.76	-0.4
1,546,385	-		LU632_RS08205	0.83	-2.4
1,546,542	+				-3.4
1,546,570	-				+0.7
1,546,585	-				+0.2
1,546,585	-				-1.4
1,546,587	+				+1.1
1,546,679	+				+0.1
1,546,730	-				+0.3
1,546,833	+				+1.0
1,546,833	+				-1.1
1,546,868	-		LU632_RS08210	0.26	+0.1
1,546,919	+		LU632_RS08210	0.53	+0.2
1,546,920	-		LU632_RS08210	0.53	-1.5
1,546,921	+		LU632_RS08210	0.54	+2.6
1,546,922	-		LU632_RS08210	0.54	-2.5
1,547,013	-				+1.5
1,547,013	-				+0.7
1,547,051	+				-0.5
1,547,051	+				+0.0
1,547,052	-				-0.1
1,547,052	-				+0.5
1,547,052	-				+1.6
1,547,086	-				-1.0
1,547,086	-				+0.9
1,547,096	+				+1.5
1,547,096	+				+0.2
1,547,097	-				-0.7
1,547,097	-				+1.5
1,547,206	-				+0.8
1,547,206	-				+0.3
1,547,206	-				-2.5